miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6122 3' -56.6 NC_001826.1 + 100726 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99926 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 100026 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 100126 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 100226 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 100326 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 100426 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 100526 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 100626 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99826 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99727 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99627 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 116886 0.75 0.328018
Target:  5'- gAGGgGGCgaggaugaaCAGGCCCAGGGUugACUGGAc -3'
miRNA:   3'- gUUCgCCG---------GUCUGGGUCCUA--UGACCU- -5'
6122 3' -56.6 NC_001826.1 + 98927 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99027 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99127 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99227 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99327 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99427 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5'
6122 3' -56.6 NC_001826.1 + 99527 0.73 0.419021
Target:  5'- gCGGGCuGCCcGGCCCGGGGUGCgGGu -3'
miRNA:   3'- -GUUCGcCGGuCUGGGUCCUAUGaCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.