miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6123 3' -54 NC_001826.1 + 97223 0.66 0.928094
Target:  5'- gGACCugGUGCagguuuuccAGUUGaGCCACCUgaucggggguggUGUGCc -3'
miRNA:   3'- gCUGG--UACG---------UCGAC-CGGUGGA------------AUACG- -5'
6123 3' -54 NC_001826.1 + 13754 0.66 0.910515
Target:  5'- gGACuauccgCAUGUGGCUGGUC-CCguuccUGUGCa -3'
miRNA:   3'- gCUG------GUACGUCGACCGGuGGa----AUACG- -5'
6123 3' -54 NC_001826.1 + 86720 0.67 0.890645
Target:  5'- uGGCCAauaUGCccAGCUGGaCCACgUgccuUGCu -3'
miRNA:   3'- gCUGGU---ACG--UCGACC-GGUGgAau--ACG- -5'
6123 3' -54 NC_001826.1 + 2152 0.67 0.883525
Target:  5'- uGGCCA-GCuGCaUGGUCGCCgc-UGCu -3'
miRNA:   3'- gCUGGUaCGuCG-ACCGGUGGaauACG- -5'
6123 3' -54 NC_001826.1 + 3116 0.68 0.852697
Target:  5'- aGAUUGUGCuAGUUGGCCAU--UAUGUg -3'
miRNA:   3'- gCUGGUACG-UCGACCGGUGgaAUACG- -5'
6123 3' -54 NC_001826.1 + 101781 0.68 0.818425
Target:  5'- aGGCgAUGCGGCaGaGCCGCUUaaaGUGCu -3'
miRNA:   3'- gCUGgUACGUCGaC-CGGUGGAa--UACG- -5'
6123 3' -54 NC_001826.1 + 21192 0.7 0.741738
Target:  5'- aGACCAUauuggauaaacaGCAGCUGGCCAUaaag-GUc -3'
miRNA:   3'- gCUGGUA------------CGUCGACCGGUGgaauaCG- -5'
6123 3' -54 NC_001826.1 + 25809 0.71 0.658438
Target:  5'- gGACCAUGCGGaacCUGcUCACCaUGUGCu -3'
miRNA:   3'- gCUGGUACGUC---GACcGGUGGaAUACG- -5'
6123 3' -54 NC_001826.1 + 2580 0.73 0.563124
Target:  5'- aGAgCGUGCAGCUGacCCugCUUAUGg -3'
miRNA:   3'- gCUgGUACGUCGACc-GGugGAAUACg -5'
6123 3' -54 NC_001826.1 + 5296 0.74 0.521771
Target:  5'- cCGGCUcUGCuagcaaGGCUGGCgCGCCUgUAUGCa -3'
miRNA:   3'- -GCUGGuACG------UCGACCG-GUGGA-AUACG- -5'
6123 3' -54 NC_001826.1 + 30388 0.75 0.46602
Target:  5'- uCGGCCGUGUucaggcgauaccagaGGCUGGCCGCCa----- -3'
miRNA:   3'- -GCUGGUACG---------------UCGACCGGUGGaauacg -5'
6123 3' -54 NC_001826.1 + 12267 0.76 0.388668
Target:  5'- gGGCCGcuacuauaUGCAGCauggacugGGCCACCUcaaUGUGCa -3'
miRNA:   3'- gCUGGU--------ACGUCGa-------CCGGUGGA---AUACG- -5'
6123 3' -54 NC_001826.1 + 2015 1.11 0.002143
Target:  5'- gCGACCAUGCAGCUGGCCACCUUAUGCc -3'
miRNA:   3'- -GCUGGUACGUCGACCGGUGGAAUACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.