miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6124 3' -59 NC_001826.1 + 27404 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27444 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27484 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27524 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27564 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27604 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27644 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27684 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27724 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27764 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27804 0.72 0.362018
Target:  5'- gGGGCCCGg--AUCCCcgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu-------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27844 0.72 0.394919
Target:  5'- gGGGCCCGg--AUCCCccgaccuucCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu--------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27885 0.7 0.456922
Target:  5'- gGGGCCCGg--AUCCCcCCGGuuCCCCCGa -3'
miRNA:   3'- -CUUGGGCagaUAGGGuGGUC--GGGGGU- -5'
6124 3' -59 NC_001826.1 + 27936 0.68 0.594046
Target:  5'- gGGGCCCG---GUCCCccgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu--------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 27976 0.72 0.394919
Target:  5'- gGGGCCCGg--AUCCCccgaccuucCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu--------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 28017 0.7 0.456922
Target:  5'- gGGGCCCGg--AUCCCcCCGGuuCCCCCGa -3'
miRNA:   3'- -CUUGGGCagaUAGGGuGGUC--GGGGGU- -5'
6124 3' -59 NC_001826.1 + 28068 0.72 0.394919
Target:  5'- gGGGCCCGg--AUCCCccgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu--------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 28109 0.68 0.563634
Target:  5'- gGGGCCCGgu--UCCCccgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagauAGGGu--------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 28150 0.67 0.645191
Target:  5'- gGGGCCCGguuccCCCACCuucccGGCCCUCGc -3'
miRNA:   3'- -CUUGGGCagauaGGGUGG-----UCGGGGGU- -5'
6124 3' -59 NC_001826.1 + 29835 0.67 0.65542
Target:  5'- gGAGCCUGUCaugAUCUagCACCAGUUCCUu -3'
miRNA:   3'- -CUUGGGCAGa--UAGG--GUGGUCGGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.