miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6124 3' -59 NC_001826.1 + 99437 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 99836 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 100136 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 100536 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 100835 0.66 0.685963
Target:  5'- cGGCCCGgggugCggGUCCCccggccuggggaGCCGGUCCCCc -3'
miRNA:   3'- cUUGGGCa----Ga-UAGGG------------UGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 10447 0.66 0.685963
Target:  5'- gGGACCCGg--GUggacaccaUCCACCAGUCCCUu -3'
miRNA:   3'- -CUUGGGCagaUA--------GGGUGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 29835 0.67 0.65542
Target:  5'- gGAGCCUGUCaugAUCUagCACCAGUUCCUu -3'
miRNA:   3'- -CUUGGGCAGa--UAGG--GUGGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 28150 0.67 0.645191
Target:  5'- gGGGCCCGguuccCCCACCuucccGGCCCUCGc -3'
miRNA:   3'- -CUUGGGCagauaGGGUGG-----UCGGGGGU- -5'
6124 3' -59 NC_001826.1 + 118411 0.67 0.645191
Target:  5'- gGGACUCccuggcaggGUCU-UCCCcccuCCAGCCCCCu -3'
miRNA:   3'- -CUUGGG---------CAGAuAGGGu---GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 70303 0.67 0.642119
Target:  5'- -cACCCGUaga-CCCGCCGGCuacugaaccaaauaCCCCAg -3'
miRNA:   3'- cuUGGGCAgauaGGGUGGUCG--------------GGGGU- -5'
6124 3' -59 NC_001826.1 + 27936 0.68 0.594046
Target:  5'- gGGGCCCG---GUCCCccgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagaUAGGGu--------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 119059 0.68 0.583872
Target:  5'- gGAACCgGgg---CCCGCCGcGCCCCCc -3'
miRNA:   3'- -CUUGGgCagauaGGGUGGU-CGGGGGu -5'
6124 3' -59 NC_001826.1 + 87626 0.68 0.573732
Target:  5'- aGACCUGUCUGgcucggccUCCCugUcGCCCUCGc -3'
miRNA:   3'- cUUGGGCAGAU--------AGGGugGuCGGGGGU- -5'
6124 3' -59 NC_001826.1 + 28109 0.68 0.563634
Target:  5'- gGGGCCCGgu--UCCCccgaccuccCCGGCCCCCu -3'
miRNA:   3'- -CUUGGGCagauAGGGu--------GGUCGGGGGu -5'
6124 3' -59 NC_001826.1 + 119201 0.69 0.553584
Target:  5'- cAGCCCGguagggucUCUGggcgCCC-CCAGCCCCgGg -3'
miRNA:   3'- cUUGGGC--------AGAUa---GGGuGGUCGGGGgU- -5'
6124 3' -59 NC_001826.1 + 22569 0.69 0.52378
Target:  5'- --uCCCGUCUAUCCCcgcgcAUCAGCUgCUAu -3'
miRNA:   3'- cuuGGGCAGAUAGGG-----UGGUCGGgGGU- -5'
6124 3' -59 NC_001826.1 + 70541 0.7 0.504254
Target:  5'- uGAGCCC-UCUAcCCCAgaacCCAGCaCCCCc -3'
miRNA:   3'- -CUUGGGcAGAUaGGGU----GGUCG-GGGGu -5'
6124 3' -59 NC_001826.1 + 27885 0.7 0.456922
Target:  5'- gGGGCCCGg--AUCCCcCCGGuuCCCCCGa -3'
miRNA:   3'- -CUUGGGCagaUAGGGuGGUC--GGGGGU- -5'
6124 3' -59 NC_001826.1 + 28017 0.7 0.456922
Target:  5'- gGGGCCCGg--AUCCCcCCGGuuCCCCCGa -3'
miRNA:   3'- -CUUGGGCagaUAGGGuGGUC--GGGGGU- -5'
6124 3' -59 NC_001826.1 + 55939 0.72 0.394919
Target:  5'- cAACCUuuccaGUCUAUCCCACaacCCCCCAg -3'
miRNA:   3'- cUUGGG-----CAGAUAGGGUGgucGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.