Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6126 | 5' | -52.2 | NC_001826.1 | + | 21707 | 1.13 | 0.002648 |
Target: 5'- uUGAAUGACAACGAUGUCAGGGCGGCCg -3' miRNA: 3'- -ACUUACUGUUGCUACAGUCCCGCCGG- -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 30124 | 0.66 | 0.966103 |
Target: 5'- --uAUGACAAUGGUGUCcuGGGCagaaaaguGCCc -3' miRNA: 3'- acuUACUGUUGCUACAGu-CCCGc-------CGG- -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 31018 | 0.67 | 0.94651 |
Target: 5'- gGGcgGACAuguUGGUGgUGGGGCGGUg -3' miRNA: 3'- aCUuaCUGUu--GCUACaGUCCCGCCGg -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 37014 | 0.67 | 0.941848 |
Target: 5'- ---uUGugGG-GGUGUguGGGCGGCg -3' miRNA: 3'- acuuACugUUgCUACAguCCCGCCGg -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 97457 | 0.68 | 0.92632 |
Target: 5'- cGAAUGucuGGCG-UGUCAccccGaGGCGGCCa -3' miRNA: 3'- aCUUACug-UUGCuACAGU----C-CCGCCGG- -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 8 | 0.69 | 0.900013 |
Target: 5'- cUGGA-GAUccggGGCuGAUGcuggguucaggaguUCAGGGCGGCCg -3' miRNA: 3'- -ACUUaCUG----UUG-CUAC--------------AGUCCCGCCGG- -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 118547 | 0.69 | 0.888319 |
Target: 5'- cGGggGGCGGgGGUGUCuaguAGGG-GGCCu -3' miRNA: 3'- aCUuaCUGUUgCUACAG----UCCCgCCGG- -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 69458 | 0.71 | 0.824278 |
Target: 5'- gGAAUcACAACuuaguaugGGUGccCGGGGCGGCCc -3' miRNA: 3'- aCUUAcUGUUG--------CUACa-GUCCCGCCGG- -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 38539 | 0.72 | 0.777869 |
Target: 5'- gUGGAucuUGGaGACGGUGgCGGuGGCGGCCu -3' miRNA: 3'- -ACUU---ACUgUUGCUACaGUC-CCGCCGG- -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 75765 | 0.74 | 0.633256 |
Target: 5'- aGAAUGGCAcaGCaGAUGUUGGaGGCGGgCg -3' miRNA: 3'- aCUUACUGU--UG-CUACAGUC-CCGCCgG- -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 1942 | 0.7 | 0.865975 |
Target: 5'- gUGGGaGGCua-GAUgGUCGuGGGCGGCCu -3' miRNA: 3'- -ACUUaCUGuugCUA-CAGU-CCCGCCGG- -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 22760 | 0.69 | 0.873659 |
Target: 5'- ----gGACAugGAUGUUAGGGgugagGGUCg -3' miRNA: 3'- acuuaCUGUugCUACAGUCCCg----CCGG- -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 24498 | 0.67 | 0.95092 |
Target: 5'- -aGAUGAUGGCuuucagGUCAGGGUucugGGCCa -3' miRNA: 3'- acUUACUGUUGcua---CAGUCCCG----CCGG- -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 28647 | 0.66 | 0.962666 |
Target: 5'- -----aGCuGCGAgucccgCGGGGCGGCCg -3' miRNA: 3'- acuuacUGuUGCUaca---GUCCCGCCGG- -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 83886 | 0.66 | 0.974799 |
Target: 5'- aUGGAUaGAUAugGAggucUGcuuggaggauuucUCAGGGCGGUg -3' miRNA: 3'- -ACUUA-CUGUugCU----AC-------------AGUCCCGCCGg -5' |
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6126 | 5' | -52.2 | NC_001826.1 | + | 29199 | 0.71 | 0.815338 |
Target: 5'- aGAGUccuccCAACGGcccCAGGGCGGCCa -3' miRNA: 3'- aCUUAcu---GUUGCUacaGUCCCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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