Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6127 | 3' | -52.6 | NC_001826.1 | + | 63262 | 0.66 | 0.953511 |
Target: 5'- aCAGAa-AUACUGGAAGAUGgcucaucaauggugcUGGGCu -3' miRNA: 3'- aGUCUagUAUGACCUUCUGC---------------GCCCGu -5' |
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6127 | 3' | -52.6 | NC_001826.1 | + | 87144 | 0.68 | 0.91582 |
Target: 5'- aUCAGA-CGUGCUG--AGuACGUGGGCu -3' miRNA: 3'- -AGUCUaGUAUGACcuUC-UGCGCCCGu -5' |
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6127 | 3' | -52.6 | NC_001826.1 | + | 117182 | 0.68 | 0.909636 |
Target: 5'- -gGGGUCg----GGAGGAUGUGGGCGu -3' miRNA: 3'- agUCUAGuaugaCCUUCUGCGCCCGU- -5' |
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6127 | 3' | -52.6 | NC_001826.1 | + | 52459 | 0.68 | 0.889553 |
Target: 5'- cUAGGUUAUACgugGGAAGAagaaugcuguCGUGGGUg -3' miRNA: 3'- aGUCUAGUAUGa--CCUUCU----------GCGCCCGu -5' |
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6127 | 3' | -52.6 | NC_001826.1 | + | 116970 | 0.69 | 0.851216 |
Target: 5'- aCAGcgUGgcCUGGGcguuGGAUGCGGGCAu -3' miRNA: 3'- aGUCuaGUauGACCU----UCUGCGCCCGU- -5' |
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6127 | 3' | -52.6 | NC_001826.1 | + | 23640 | 1.09 | 0.004131 |
Target: 5'- aUCAGAUCAUACUGGAAGACGCGGGCAc -3' miRNA: 3'- -AGUCUAGUAUGACCUUCUGCGCCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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