miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6132 3' -52.5 NC_001826.1 + 75742 0.66 0.952989
Target:  5'- cGUGAGaACUUUCCCAGgguuaugaAAAGCCUCaCAu -3'
miRNA:   3'- -CAUUC-UGAGGGGGUUg-------UUUCGGAG-GU- -5'
6132 3' -52.5 NC_001826.1 + 82076 0.66 0.948651
Target:  5'- --uGGACUUUCUgAcuGCGAAGCUUCCAg -3'
miRNA:   3'- cauUCUGAGGGGgU--UGUUUCGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 88863 0.66 0.952989
Target:  5'- -gAAGuaaUCCCCCAGCugcAAGCUgCCAc -3'
miRNA:   3'- caUUCug-AGGGGGUUGu--UUCGGaGGU- -5'
6132 3' -52.5 NC_001826.1 + 92639 0.66 0.944055
Target:  5'- -gGAGACUUCUCCAGCGccGGCUugUCCc -3'
miRNA:   3'- caUUCUGAGGGGGUUGUu-UCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 94617 0.68 0.883652
Target:  5'- -aAAGGCUCCCCCGuaGCAuacCUUCCc -3'
miRNA:   3'- caUUCUGAGGGGGU--UGUuucGGAGGu -5'
6132 3' -52.5 NC_001826.1 + 98945 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99045 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99145 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99245 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99345 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99445 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99545 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99645 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99745 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99844 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99944 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100044 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100144 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100244 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 100344 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.