miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6132 3' -52.5 NC_001826.1 + 31147 1.09 0.004186
Target:  5'- uGUAAGACUCCCCCAACAAAGCCUCCAg -3'
miRNA:   3'- -CAUUCUGAGGGGGUUGUUUCGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 49004 0.77 0.437657
Target:  5'- -gGAGACcCCCCCGcCAAAGCC-CCAa -3'
miRNA:   3'- caUUCUGaGGGGGUuGUUUCGGaGGU- -5'
6132 3' -52.5 NC_001826.1 + 70529 0.73 0.622941
Target:  5'- ----aACUCCCCCAGCuGAGcCCUCUAc -3'
miRNA:   3'- cauucUGAGGGGGUUGuUUC-GGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 119184 0.73 0.633717
Target:  5'- --uGGGCgCCCCCAGCcccGGGUCUCCAg -3'
miRNA:   3'- cauUCUGaGGGGGUUGu--UUCGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 69848 0.73 0.655256
Target:  5'- ---uGACUCCCCCuacGCAGAaCCUCCc -3'
miRNA:   3'- cauuCUGAGGGGGu--UGUUUcGGAGGu -5'
6132 3' -52.5 NC_001826.1 + 12553 0.72 0.698006
Target:  5'- -gGGGAC-CUCCCAGCcguguGCCUCCAc -3'
miRNA:   3'- caUUCUGaGGGGGUUGuuu--CGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 56480 0.72 0.708567
Target:  5'- uUGAGugUCCCCCAAUAagaguGAGCCa--- -3'
miRNA:   3'- cAUUCugAGGGGGUUGU-----UUCGGaggu -5'
6132 3' -52.5 NC_001826.1 + 118334 0.72 0.71801
Target:  5'- --cAGGCUgCCCC-GCAguuccccGAGCCUCCAg -3'
miRNA:   3'- cauUCUGAgGGGGuUGU-------UUCGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 104925 0.71 0.760077
Target:  5'- aGUGAGugUCCCCaCAcCGGAGCCacgaugcuugUCCu -3'
miRNA:   3'- -CAUUCugAGGGG-GUuGUUUCGG----------AGGu -5'
6132 3' -52.5 NC_001826.1 + 19420 0.71 0.779878
Target:  5'- --uGGACUCCaCCCAACAAuacuGCUUCa- -3'
miRNA:   3'- cauUCUGAGG-GGGUUGUUu---CGGAGgu -5'
6132 3' -52.5 NC_001826.1 + 12184 0.7 0.789562
Target:  5'- -gGAGACUCCUCCugagguGCUUCCAg -3'
miRNA:   3'- caUUCUGAGGGGGuuguuuCGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 118700 0.7 0.808451
Target:  5'- -gAGGGCaUCCCCgAGCAGGGCCcgagCCc -3'
miRNA:   3'- caUUCUG-AGGGGgUUGUUUCGGa---GGu -5'
6132 3' -52.5 NC_001826.1 + 22889 0.7 0.817634
Target:  5'- -aAAGAUUCCCUgCAGgAAGGCUUCCu -3'
miRNA:   3'- caUUCUGAGGGG-GUUgUUUCGGAGGu -5'
6132 3' -52.5 NC_001826.1 + 31120 0.69 0.849917
Target:  5'- -----cCUCCUCCAGCuggaguuuagcucaGGAGCCUCCAc -3'
miRNA:   3'- cauucuGAGGGGGUUG--------------UUUCGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 63234 0.69 0.860569
Target:  5'- gGUAAGACUCCaCgGugGAGGCauaaUCCAa -3'
miRNA:   3'- -CAUUCUGAGGgGgUugUUUCGg---AGGU- -5'
6132 3' -52.5 NC_001826.1 + 63398 0.68 0.876198
Target:  5'- aUAAGAC-CCUCCAGCAuAGCCa--- -3'
miRNA:   3'- cAUUCUGaGGGGGUUGUuUCGGaggu -5'
6132 3' -52.5 NC_001826.1 + 16843 0.68 0.876198
Target:  5'- -gAAGGuCUCCCCCGugGcAGCCaccCCAc -3'
miRNA:   3'- caUUCU-GAGGGGGUugUuUCGGa--GGU- -5'
6132 3' -52.5 NC_001826.1 + 109794 0.68 0.883652
Target:  5'- -gGGGGCUCUCCCAGCcucuguGUCUUCGa -3'
miRNA:   3'- caUUCUGAGGGGGUUGuuu---CGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 94617 0.68 0.883652
Target:  5'- -aAAGGCUCCCCCGuaGCAuacCUUCCc -3'
miRNA:   3'- caUUCUGAGGGGGU--UGUuucGGAGGu -5'
6132 3' -52.5 NC_001826.1 + 48609 0.68 0.883652
Target:  5'- -aGAGACacacagCCCCUAcuuccaACuGGGCCUCCAg -3'
miRNA:   3'- caUUCUGa-----GGGGGU------UGuUUCGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.