miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6132 3' -52.5 NC_001826.1 + 100444 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 99445 0.66 0.960909
Target:  5'- gGUGcGGgUCCCCCGGCcuggGGAGCCggUCCc -3'
miRNA:   3'- -CAUuCUgAGGGGGUUG----UUUCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 16638 0.66 0.957073
Target:  5'- -aGAGACUCCCCCAcc----CCUCuCAa -3'
miRNA:   3'- caUUCUGAGGGGGUuguuucGGAG-GU- -5'
6132 3' -52.5 NC_001826.1 + 88863 0.66 0.952989
Target:  5'- -gAAGuaaUCCCCCAGCugcAAGCUgCCAc -3'
miRNA:   3'- caUUCug-AGGGGGUUGu--UUCGGaGGU- -5'
6132 3' -52.5 NC_001826.1 + 75742 0.66 0.952989
Target:  5'- cGUGAGaACUUUCCCAGgguuaugaAAAGCCUCaCAu -3'
miRNA:   3'- -CAUUC-UGAGGGGGUUg-------UUUCGGAG-GU- -5'
6132 3' -52.5 NC_001826.1 + 82076 0.66 0.948651
Target:  5'- --uGGACUUUCUgAcuGCGAAGCUUCCAg -3'
miRNA:   3'- cauUCUGAGGGGgU--UGUUUCGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 11479 0.66 0.948651
Target:  5'- -cAAGAUUCCCCCAauuuuucauggACGuGGCCUg-- -3'
miRNA:   3'- caUUCUGAGGGGGU-----------UGUuUCGGAggu -5'
6132 3' -52.5 NC_001826.1 + 4453 0.66 0.944055
Target:  5'- ---cGACguuaaagUCCCCAugGAAGCCgcggCCGa -3'
miRNA:   3'- cauuCUGa------GGGGGUugUUUCGGa---GGU- -5'
6132 3' -52.5 NC_001826.1 + 92639 0.66 0.944055
Target:  5'- -gGAGACUUCUCCAGCGccGGCUugUCCc -3'
miRNA:   3'- caUUCUGAGGGGGUUGUu-UCGG--AGGu -5'
6132 3' -52.5 NC_001826.1 + 118449 0.67 0.934079
Target:  5'- ----cACUCCCCCGACcccAGCCcCCu -3'
miRNA:   3'- cauucUGAGGGGGUUGuu-UCGGaGGu -5'
6132 3' -52.5 NC_001826.1 + 42906 0.67 0.928695
Target:  5'- -aGGGACUCUCgCAACAGcuAGCCacCCAc -3'
miRNA:   3'- caUUCUGAGGGgGUUGUU--UCGGa-GGU- -5'
6132 3' -52.5 NC_001826.1 + 70397 0.68 0.910955
Target:  5'- ----aACUCCCCCAGCuGAaCCUUCAa -3'
miRNA:   3'- cauucUGAGGGGGUUGuUUcGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 109794 0.68 0.883652
Target:  5'- -gGGGGCUCUCCCAGCcucuguGUCUUCGa -3'
miRNA:   3'- caUUCUGAGGGGGUUGuuu---CGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 94617 0.68 0.883652
Target:  5'- -aAAGGCUCCCCCGuaGCAuacCUUCCc -3'
miRNA:   3'- caUUCUGAGGGGGU--UGUuucGGAGGu -5'
6132 3' -52.5 NC_001826.1 + 118413 0.68 0.883652
Target:  5'- cUGGGACUCCCUgG-CAGGGUCUUCc -3'
miRNA:   3'- cAUUCUGAGGGGgUuGUUUCGGAGGu -5'
6132 3' -52.5 NC_001826.1 + 48609 0.68 0.883652
Target:  5'- -aGAGACacacagCCCCUAcuuccaACuGGGCCUCCAg -3'
miRNA:   3'- caUUCUGa-----GGGGGU------UGuUUCGGAGGU- -5'
6132 3' -52.5 NC_001826.1 + 16843 0.68 0.876198
Target:  5'- -gAAGGuCUCCCCCGugGcAGCCaccCCAc -3'
miRNA:   3'- caUUCU-GAGGGGGUugUuUCGGa--GGU- -5'
6132 3' -52.5 NC_001826.1 + 63398 0.68 0.876198
Target:  5'- aUAAGAC-CCUCCAGCAuAGCCa--- -3'
miRNA:   3'- cAUUCUGaGGGGGUUGUuUCGGaggu -5'
6132 3' -52.5 NC_001826.1 + 63234 0.69 0.860569
Target:  5'- gGUAAGACUCCaCgGugGAGGCauaaUCCAa -3'
miRNA:   3'- -CAUUCUGAGGgGgUugUUUCGg---AGGU- -5'
6132 3' -52.5 NC_001826.1 + 31120 0.69 0.849917
Target:  5'- -----cCUCCUCCAGCuggaguuuagcucaGGAGCCUCCAc -3'
miRNA:   3'- cauucuGAGGGGGUUG--------------UUUCGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.