Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 6133 | 3' | -64.5 | NC_001826.1 | + | 101045 | 0.66 | 0.503819 |
|
Target: 5'- uGCGgGUCCccCGG-CCUGGGgAgCCAa -3' miRNA: 3'- gCGCgCAGGa-GCCaGGGCCCgUgGGU- -5' |
|||||||
| 6133 | 3' | -64.5 | NC_001826.1 | + | 119224 | 0.66 | 0.474716 |
|
Target: 5'- uGCGCcaUCCUCGGggguagcggcagCCCgguagggucucuGGGCGCCCc -3' miRNA: 3'- gCGCGc-AGGAGCCa-----------GGG------------CCCGUGGGu -5' |
|||||||
| 6133 | 3' | -64.5 | NC_001826.1 | + | 118956 | 0.68 | 0.367807 |
|
Target: 5'- cCGCGgccCGUCCUCaGG-CCCGGGCgguagcggccgcGCCUg -3' miRNA: 3'- -GCGC---GCAGGAG-CCaGGGCCCG------------UGGGu -5' |
|||||||
| 6133 | 3' | -64.5 | NC_001826.1 | + | 119031 | 0.68 | 0.352658 |
|
Target: 5'- gGCGCGcCCUgGaGaCCCggggcuggGGGCGCCCAg -3' miRNA: 3'- gCGCGCaGGAgC-CaGGG--------CCCGUGGGU- -5' |
|||||||
| 6133 | 3' | -64.5 | NC_001826.1 | + | 102202 | 0.69 | 0.337957 |
|
Target: 5'- uCGCGCGU----GG-CCCGGGUACCCu -3' miRNA: 3'- -GCGCGCAggagCCaGGGCCCGUGGGu -5' |
|||||||
| 6133 | 3' | -64.5 | NC_001826.1 | + | 33309 | 1.08 | 0.000546 |
|
Target: 5'- gCGCGCGUCCUCGGUCCCGGGCACCCAg -3' miRNA: 3'- -GCGCGCAGGAGCCAGGGCCCGUGGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home