miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6134 3' -57.4 NC_001826.1 + 33444 1.12 0.001104
Target:  5'- uGGCAGGUUCUCCACCCCCAGAACGGGa -3'
miRNA:   3'- -CCGUCCAAGAGGUGGGGGUCUUGCCC- -5'
6134 3' -57.4 NC_001826.1 + 118601 0.7 0.590883
Target:  5'- aGCGGGgaCcCCcgACCCCCGGgGGCGGGc -3'
miRNA:   3'- cCGUCCaaGaGG--UGGGGGUC-UUGCCC- -5'
6134 3' -57.4 NC_001826.1 + 4390 0.68 0.722144
Target:  5'- aGGCGGGcgCugaggUCUGCCCCCAGAuguaGaGGa -3'
miRNA:   3'- -CCGUCCaaG-----AGGUGGGGGUCUug--C-CC- -5'
6134 3' -57.4 NC_001826.1 + 118890 0.67 0.751296
Target:  5'- cGGCggAGGgggUCCAgCCCCCGGcAGgGGGg -3'
miRNA:   3'- -CCG--UCCaagAGGU-GGGGGUC-UUgCCC- -5'
6134 3' -57.4 NC_001826.1 + 53754 0.67 0.760818
Target:  5'- gGGCuggacuuucucaAGGuUUCUCCGCCCCCuccuGAcagGCcuGGGa -3'
miRNA:   3'- -CCG------------UCC-AAGAGGUGGGGGu---CU---UG--CCC- -5'
6134 3' -57.4 NC_001826.1 + 10583 0.66 0.840392
Target:  5'- -cCAGGUUacaUGCCCCUAGAugGGa -3'
miRNA:   3'- ccGUCCAAgagGUGGGGGUCUugCCc -5'
6134 3' -57.4 NC_001826.1 + 99581 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99681 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99781 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99881 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99981 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 100081 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99482 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99382 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99282 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99182 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99082 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 64622 0.67 0.760818
Target:  5'- cGGCcuGGUUCUcaCCACaaaCUUGGAugGGGa -3'
miRNA:   3'- -CCGu-CCAAGA--GGUGg--GGGUCUugCCC- -5'
6134 3' -57.4 NC_001826.1 + 97215 0.67 0.788671
Target:  5'- uGCAGGUUUUCCaguugaGCCaCCuGAuCGGGg -3'
miRNA:   3'- cCGUCCAAGAGG------UGGgGGuCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 119196 0.77 0.28114
Target:  5'- cGGUAGGgUCUCUgggcGCCCCCAGcccCGGGu -3'
miRNA:   3'- -CCGUCCaAGAGG----UGGGGGUCuu-GCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.