miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6134 3' -57.4 NC_001826.1 + 99282 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99382 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99482 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99581 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99681 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99781 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 99881 0.68 0.73195
Target:  5'- aGGCcgGGGgaC-CCGCaCCCCGGGcCGGGc -3'
miRNA:   3'- -CCG--UCCaaGaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 4390 0.68 0.722144
Target:  5'- aGGCGGGcgCugaggUCUGCCCCCAGAuguaGaGGa -3'
miRNA:   3'- -CCGUCCaaG-----AGGUGGGGGUCUug--C-CC- -5'
6134 3' -57.4 NC_001826.1 + 100499 0.69 0.651862
Target:  5'- cGGgGGGga--CCGCuCCCCAGGcCGGGg -3'
miRNA:   3'- -CCgUCCaagaGGUG-GGGGUCUuGCCC- -5'
6134 3' -57.4 NC_001826.1 + 118601 0.7 0.590883
Target:  5'- aGCGGGgaCcCCcgACCCCCGGgGGCGGGc -3'
miRNA:   3'- cCGUCCaaGaGG--UGGGGGUC-UUGCCC- -5'
6134 3' -57.4 NC_001826.1 + 116319 0.71 0.527024
Target:  5'- cGGCAGGUauucuggUCUCugacauuaggggagCACCCCCuGAGCGccGGg -3'
miRNA:   3'- -CCGUCCA-------AGAG--------------GUGGGGGuCUUGC--CC- -5'
6134 3' -57.4 NC_001826.1 + 29203 0.72 0.464066
Target:  5'- aGGCAGaGUcCUCCcaacGgCCCCAGGGCGGc -3'
miRNA:   3'- -CCGUC-CAaGAGG----UgGGGGUCUUGCCc -5'
6134 3' -57.4 NC_001826.1 + 118880 0.73 0.419088
Target:  5'- gGGCGGGggggCUCgAcCCCCCAGGG-GGGa -3'
miRNA:   3'- -CCGUCCaa--GAGgU-GGGGGUCUUgCCC- -5'
6134 3' -57.4 NC_001826.1 + 118994 0.74 0.385072
Target:  5'- gGGCAGGggUC-CCcUCCCCGGGAgGGGc -3'
miRNA:   3'- -CCGUCCa-AGaGGuGGGGGUCUUgCCC- -5'
6134 3' -57.4 NC_001826.1 + 119196 0.77 0.28114
Target:  5'- cGGUAGGgUCUCUgggcGCCCCCAGcccCGGGu -3'
miRNA:   3'- -CCGUCCaAGAGG----UGGGGGUCuu-GCCC- -5'
6134 3' -57.4 NC_001826.1 + 33444 1.12 0.001104
Target:  5'- uGGCAGGUUCUCCACCCCCAGAACGGGa -3'
miRNA:   3'- -CCGUCCAAGAGGUGGGGGUCUUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.