miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6134 5' -54.7 NC_001826.1 + 100185 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 100584 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 100684 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 100784 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 100884 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 100984 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 101184 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 100085 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99985 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99086 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99186 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99286 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99386 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99486 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99585 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99685 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99785 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 99885 0.72 0.575006
Target:  5'- -cCCCAGGCCG-GGGGACccgcaccccgGGCCGGGCa -3'
miRNA:   3'- gaGGGUCCGGUgUUUCUG----------CCGGUUUG- -5'
6134 5' -54.7 NC_001826.1 + 117104 0.73 0.503173
Target:  5'- -gCCCAGGCCACGcuGugGaGCCucuGCu -3'
miRNA:   3'- gaGGGUCCGGUGUuuCugC-CGGuu-UG- -5'
6134 5' -54.7 NC_001826.1 + 118812 0.77 0.340738
Target:  5'- -cCCCGGGCCcgGgGAGGGgGGCCGGGCg -3'
miRNA:   3'- gaGGGUCCGG--UgUUUCUgCCGGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.