miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6136 3' -43.2 NC_001826.1 + 87856 0.66 1
Target:  5'- uUCAAGGccucGGUGGGAGUGUAguCGc-- -3'
miRNA:   3'- -GGUUUUa---CCACUCUCACAUguGUuuc -5'
6136 3' -43.2 NC_001826.1 + 118593 0.66 1
Target:  5'- gCCGAGGgggcUGGggucggGGGAGUGgggGCGgGGAGg -3'
miRNA:   3'- -GGUUUU----ACCa-----CUCUCACa--UGUgUUUC- -5'
6136 3' -43.2 NC_001826.1 + 70731 0.66 0.999999
Target:  5'- uCCAcu-UGGUGGGGGUGUGgGuucaGGAGc -3'
miRNA:   3'- -GGUuuuACCACUCUCACAUgUg---UUUC- -5'
6136 3' -43.2 NC_001826.1 + 69822 0.67 0.999999
Target:  5'- uCUGAGGUGGUGGGAucggACGCGGAa -3'
miRNA:   3'- -GGUUUUACCACUCUcacaUGUGUUUc -5'
6136 3' -43.2 NC_001826.1 + 116724 0.67 0.999999
Target:  5'- -gGAAGUGGUcGAG-GUGUGaacgacCACAAAGc -3'
miRNA:   3'- ggUUUUACCA-CUCuCACAU------GUGUUUC- -5'
6136 3' -43.2 NC_001826.1 + 97707 0.66 0.999999
Target:  5'- -aGAGGUGGUGuacaucaucAGGGUGUAgGCGGu- -3'
miRNA:   3'- ggUUUUACCAC---------UCUCACAUgUGUUuc -5'
6136 3' -43.2 NC_001826.1 + 92943 0.67 0.999998
Target:  5'- aCCAGAAUGGggcAGuGUGgggGCACucGGg -3'
miRNA:   3'- -GGUUUUACCac-UCuCACa--UGUGuuUC- -5'
6136 3' -43.2 NC_001826.1 + 21475 0.68 0.99999
Target:  5'- -gGAAGUGGUagaguuugGAGAGaUGUugGCAGAc -3'
miRNA:   3'- ggUUUUACCA--------CUCUC-ACAugUGUUUc -5'
6136 3' -43.2 NC_001826.1 + 34844 0.68 0.99999
Target:  5'- uCCAuGAUGGUGuGGuugGUGCAUggGGu -3'
miRNA:   3'- -GGUuUUACCACuCUca-CAUGUGuuUC- -5'
6136 3' -43.2 NC_001826.1 + 68384 0.69 0.999961
Target:  5'- aCCAGGGuUGG-GGGAGU-UGCAUAGGGg -3'
miRNA:   3'- -GGUUUU-ACCaCUCUCAcAUGUGUUUC- -5'
6136 3' -43.2 NC_001826.1 + 87664 0.7 0.999835
Target:  5'- gCCAGGuUGGgGAGGGUG-ACGCuuGGg -3'
miRNA:   3'- -GGUUUuACCaCUCUCACaUGUGuuUC- -5'
6136 3' -43.2 NC_001826.1 + 69638 1.14 0.022786
Target:  5'- cCCAAAAUGGUGAGAGUGUACACAAAGa -3'
miRNA:   3'- -GGUUUUACCACUCUCACAUGUGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.