miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6137 3' -56.4 NC_001826.1 + 99697 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 118598 0.68 0.760907
Target:  5'- gUCAGCGGGGacccCcGACCCCcgGGGGCGGg -3'
miRNA:   3'- -GGUUGCCUCc---GaCUGGGG--UUUCGCCg -5'
6137 3' -56.4 NC_001826.1 + 98997 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 99097 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 99197 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 99297 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 99397 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 99497 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 99597 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 98897 0.68 0.760907
Target:  5'- aCCG--GGGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUugCCUCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 19542 0.68 0.74153
Target:  5'- uCCAG-GGGGGCUG-CCCgGGcugcAGCGGa -3'
miRNA:   3'- -GGUUgCCUCCGACuGGGgUU----UCGCCg -5'
6137 3' -56.4 NC_001826.1 + 118666 0.69 0.721767
Target:  5'- gUAGCGG-GGC---CCCCGGAGgGGCu -3'
miRNA:   3'- gGUUGCCuCCGacuGGGGUUUCgCCG- -5'
6137 3' -56.4 NC_001826.1 + 97456 0.69 0.701691
Target:  5'- gCGAauGucuGGCgUGucACCCCGAGGCGGCc -3'
miRNA:   3'- gGUUgcCu--CCG-AC--UGGGGUUUCGCCG- -5'
6137 3' -56.4 NC_001826.1 + 44226 0.69 0.701691
Target:  5'- -uGGCGGGGGa--ACCuCCAAGGCGGg -3'
miRNA:   3'- ggUUGCCUCCgacUGG-GGUUUCGCCg -5'
6137 3' -56.4 NC_001826.1 + 118792 0.69 0.701691
Target:  5'- gCGGgGGAGGCUugugggGGCCCCGggcccggggaGGGgGGCc -3'
miRNA:   3'- gGUUgCCUCCGA------CUGGGGU----------UUCgCCG- -5'
6137 3' -56.4 NC_001826.1 + 119140 0.69 0.69156
Target:  5'- cCCAggcGCGGGcGCaUGgcGCCCCAGGcGCGGCc -3'
miRNA:   3'- -GGU---UGCCUcCG-AC--UGGGGUUU-CGCCG- -5'
6137 3' -56.4 NC_001826.1 + 119091 0.69 0.681378
Target:  5'- cCCGA-GGAuGGCgcagggggGACCCCuGGGCaGGCa -3'
miRNA:   3'- -GGUUgCCU-CCGa-------CUGGGGuUUCG-CCG- -5'
6137 3' -56.4 NC_001826.1 + 99779 0.7 0.644448
Target:  5'- cCCGGCGGgauggggggaaccggGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUUGCC---------------UCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 100778 0.7 0.644448
Target:  5'- cCCGGCGGgauggggggaaccggGGGacggGGCCCCGGAGCGa- -3'
miRNA:   3'- -GGUUGCC---------------UCCga--CUGGGGUUUCGCcg -5'
6137 3' -56.4 NC_001826.1 + 118880 0.7 0.64033
Target:  5'- -gGGCGGggGGGCUcGACCCCccaggggggaAGAGgGGCu -3'
miRNA:   3'- ggUUGCC--UCCGA-CUGGGG----------UUUCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.