miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6138 3' -53.8 NC_001826.1 + 33552 0.66 0.943632
Target:  5'- aAGCUGuuGgGGAG-CGUCAGAgGGGa -3'
miRNA:   3'- cUCGGCuuUgUCUCuGCGGUCUaCCC- -5'
6138 3' -53.8 NC_001826.1 + 70700 0.66 0.938863
Target:  5'- gGAGCUuuGGCGGGGGUGCUGGGuucUGGGg -3'
miRNA:   3'- -CUCGGcuUUGUCUCUGCGGUCU---ACCC- -5'
6138 3' -53.8 NC_001826.1 + 119074 0.66 0.933843
Target:  5'- cGGGCCGggGCGGGGGgaaccggggccCGCCGcgccccccuGccGGGg -3'
miRNA:   3'- -CUCGGCuuUGUCUCU-----------GCGGU---------CuaCCC- -5'
6138 3' -53.8 NC_001826.1 + 23464 0.66 0.928571
Target:  5'- uGGGCaGAGGCGGGGGCGCgaguauaAGAUauaGGGa -3'
miRNA:   3'- -CUCGgCUUUGUCUCUGCGg------UCUA---CCC- -5'
6138 3' -53.8 NC_001826.1 + 118893 0.67 0.913677
Target:  5'- -cGCCGggGguCGGGGGCGggggggcucgaccccCCAGggGGGa -3'
miRNA:   3'- cuCGGCuuU--GUCUCUGC---------------GGUCuaCCC- -5'
6138 3' -53.8 NC_001826.1 + 95144 0.69 0.829197
Target:  5'- cGGGCagauGGAGCAGGGAC-CUcGAUGGGu -3'
miRNA:   3'- -CUCGg---CUUUGUCUCUGcGGuCUACCC- -5'
6138 3' -53.8 NC_001826.1 + 97364 0.69 0.820458
Target:  5'- cAGCCuuGACAG-GGCaGCCAG-UGGGg -3'
miRNA:   3'- cUCGGcuUUGUCuCUG-CGGUCuACCC- -5'
6138 3' -53.8 NC_001826.1 + 118815 0.7 0.764531
Target:  5'- cGGGCCcGGGgAGGGGgGCCGGgcGGGg -3'
miRNA:   3'- -CUCGGcUUUgUCUCUgCGGUCuaCCC- -5'
6138 3' -53.8 NC_001826.1 + 118549 0.71 0.744788
Target:  5'- gGGGCCGGAGCuggcccucGGAGGCcggagaggGCCAGAgucugaacugUGGGg -3'
miRNA:   3'- -CUCGGCUUUG--------UCUCUG--------CGGUCU----------ACCC- -5'
6138 3' -53.8 NC_001826.1 + 64308 0.72 0.651922
Target:  5'- uAGCCacca-AGAGAUGCCAGggGGGa -3'
miRNA:   3'- cUCGGcuuugUCUCUGCGGUCuaCCC- -5'
6138 3' -53.8 NC_001826.1 + 70659 1.11 0.002574
Target:  5'- gGAGCCGAAACAGAGACGCCAGAUGGGg -3'
miRNA:   3'- -CUCGGCUUUGUCUCUGCGGUCUACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.