miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6138 5' -56.3 NC_001826.1 + 118145 0.66 0.836306
Target:  5'- gGCUCAucuCCAGCcUCCCUgCCAGGg-- -3'
miRNA:   3'- gUGAGUu--GGUCGuAGGGG-GGUCUgau -5'
6138 5' -56.3 NC_001826.1 + 107738 0.66 0.818941
Target:  5'- -cCUCAACCaAGCcauagacagCCCCCCuGACa- -3'
miRNA:   3'- guGAGUUGG-UCGua-------GGGGGGuCUGau -5'
6138 5' -56.3 NC_001826.1 + 161 0.66 0.809983
Target:  5'- aACUCcugaacCCAGCAUCagCCCCGGAUc- -3'
miRNA:   3'- gUGAGuu----GGUCGUAGg-GGGGUCUGau -5'
6138 5' -56.3 NC_001826.1 + 101331 0.67 0.772534
Target:  5'- aACcCAACCAuauGCAUCCCCCUAaACa- -3'
miRNA:   3'- gUGaGUUGGU---CGUAGGGGGGUcUGau -5'
6138 5' -56.3 NC_001826.1 + 64252 0.67 0.772534
Target:  5'- aCAUUUGACguGUuuaaCCCCCCGGACg- -3'
miRNA:   3'- -GUGAGUUGguCGua--GGGGGGUCUGau -5'
6138 5' -56.3 NC_001826.1 + 31811 0.69 0.671011
Target:  5'- gACgUCAucuCCAGgAUCUCCCUAGACUu -3'
miRNA:   3'- gUG-AGUu--GGUCgUAGGGGGGUCUGAu -5'
6138 5' -56.3 NC_001826.1 + 23911 0.69 0.669962
Target:  5'- --gUCAACCAGCAacaUCCCCCUaccacccaccuguGGGCa- -3'
miRNA:   3'- gugAGUUGGUCGU---AGGGGGG-------------UCUGau -5'
6138 5' -56.3 NC_001826.1 + 88745 0.69 0.660513
Target:  5'- -uCUUGGCacaGGCAUCagaCCCCAGGCUGg -3'
miRNA:   3'- guGAGUUGg--UCGUAGg--GGGGUCUGAU- -5'
6138 5' -56.3 NC_001826.1 + 33104 0.69 0.628907
Target:  5'- aCGCcCAGUCGGCGUCCCCCCGaACa- -3'
miRNA:   3'- -GUGaGUUGGUCGUAGGGGGGUcUGau -5'
6138 5' -56.3 NC_001826.1 + 19396 0.71 0.524913
Target:  5'- cCGCUgCAGCCcgGGCAgCCCCCCuGGACUc -3'
miRNA:   3'- -GUGA-GUUGG--UCGUaGGGGGG-UCUGAu -5'
6138 5' -56.3 NC_001826.1 + 70693 1.06 0.002623
Target:  5'- cCACUCAACCAGCAUCCCCCCAGACUAc -3'
miRNA:   3'- -GUGAGUUGGUCGUAGGGGGGUCUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.