Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6139 | 5' | -52.1 | NC_001826.1 | + | 78143 | 1.1 | 0.004257 |
Target: 5'- gUGGGAGGAACACGUCUGACCAAUGACu -3' miRNA: 3'- -ACCCUCCUUGUGCAGACUGGUUACUG- -5' |
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6139 | 5' | -52.1 | NC_001826.1 | + | 118585 | 0.71 | 0.773991 |
Target: 5'- gGGGAGGGGCACGgucagCgggGACCcccGACc -3' miRNA: 3'- aCCCUCCUUGUGCa----Ga--CUGGuuaCUG- -5' |
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6139 | 5' | -52.1 | NC_001826.1 | + | 57525 | 0.71 | 0.820989 |
Target: 5'- gGGGAGGuugGACA-GUCUGACCAuagaaGAUa -3' miRNA: 3'- aCCCUCC---UUGUgCAGACUGGUua---CUG- -5' |
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6139 | 5' | -52.1 | NC_001826.1 | + | 42748 | 0.7 | 0.863301 |
Target: 5'- aUGGGGGGGAUgaucuguaccaACaUCUGGCUAAUGGa -3' miRNA: 3'- -ACCCUCCUUG-----------UGcAGACUGGUUACUg -5' |
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6139 | 5' | -52.1 | NC_001826.1 | + | 112561 | 0.67 | 0.940541 |
Target: 5'- -uGGAuGGAGCAC--CUGACCuGUGGCa -3' miRNA: 3'- acCCU-CCUUGUGcaGACUGGuUACUG- -5' |
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6139 | 5' | -52.1 | NC_001826.1 | + | 4443 | 0.67 | 0.9498 |
Target: 5'- aGGGAuGGGGaaaGCG-CUGAUCAcAUGGCa -3' miRNA: 3'- aCCCU-CCUUg--UGCaGACUGGU-UACUG- -5' |
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6139 | 5' | -52.1 | NC_001826.1 | + | 90837 | 0.7 | 0.838538 |
Target: 5'- cGuGGAGGGACGaaauUGUCUGGaugagCAAUGACa -3' miRNA: 3'- aC-CCUCCUUGU----GCAGACUg----GUUACUG- -5' |
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6139 | 5' | -52.1 | NC_001826.1 | + | 87642 | 0.69 | 0.871108 |
Target: 5'- uUGGGAGGGACGucccagaccUGUCUGGCUc--GGCc -3' miRNA: 3'- -ACCCUCCUUGU---------GCAGACUGGuuaCUG- -5' |
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6139 | 5' | -52.1 | NC_001826.1 | + | 5852 | 0.68 | 0.917109 |
Target: 5'- gUGGGAauguuuuccugaguGGGAUAUGUCUucucGACCGgggGUGGCg -3' miRNA: 3'- -ACCCU--------------CCUUGUGCAGA----CUGGU---UACUG- -5' |
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6139 | 5' | -52.1 | NC_001826.1 | + | 50546 | 0.66 | 0.971646 |
Target: 5'- aGGGuaauuGGAACACucucccCUGACuCGGUGAUa -3' miRNA: 3'- aCCCu----CCUUGUGca----GACUG-GUUACUG- -5' |
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6139 | 5' | -52.1 | NC_001826.1 | + | 1221 | 0.66 | 0.971646 |
Target: 5'- gGGGAGGAAacacucCACGguagCUGAgCCAccaGGCa -3' miRNA: 3'- aCCCUCCUU------GUGCa---GACU-GGUua-CUG- -5' |
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6139 | 5' | -52.1 | NC_001826.1 | + | 79997 | 0.7 | 0.838538 |
Target: 5'- gGGGAugcuuaauGGGAUcUGUUUGGCCAAUGAUu -3' miRNA: 3'- aCCCU--------CCUUGuGCAGACUGGUUACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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