miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6141 3' -60.3 NC_001826.1 + 28090 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 28223 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 28264 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27478 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27438 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27398 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 118821 0.72 0.348847
Target:  5'- cGGGGAGGg-GGGCCGGGCGGGg--GGa -3'
miRNA:   3'- -UCCCUCCggCUCGGUCUGUCCagaCC- -5'
6141 3' -60.3 NC_001826.1 + 26918 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 26958 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 26998 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27038 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27078 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27118 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27158 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27198 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27238 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27278 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27318 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 27358 0.72 0.348847
Target:  5'- cGGGAGG--GGGCCGGGgAGGUCgGGg -3'
miRNA:   3'- uCCCUCCggCUCGGUCUgUCCAGaCC- -5'
6141 3' -60.3 NC_001826.1 + 118241 0.72 0.312029
Target:  5'- uGGGGGGCUgaGAGCCAGGCgAGGggagagGGg -3'
miRNA:   3'- uCCCUCCGG--CUCGGUCUG-UCCaga---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.