miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6142 3' -50.5 NC_001826.1 + 118882 0.66 0.987097
Target:  5'- ---cCCACCCCCG--GCG-GAGGGg- -3'
miRNA:   3'- aaaaGGUGGGGGUuuUGUgCUCCUac -5'
6142 3' -50.5 NC_001826.1 + 84764 0.66 0.983414
Target:  5'- ---aCCGCCCCCAGggUAC-AGGc-- -3'
miRNA:   3'- aaaaGGUGGGGGUUuuGUGcUCCuac -5'
6142 3' -50.5 NC_001826.1 + 118119 0.66 0.981298
Target:  5'- ---cCCACCCCCcaAGAAgAgGGGGggGg -3'
miRNA:   3'- aaaaGGUGGGGG--UUUUgUgCUCCuaC- -5'
6142 3' -50.5 NC_001826.1 + 89792 0.66 0.978985
Target:  5'- -aUUCCACCuaCCCAGggUcaGCGAacaguGGAUGa -3'
miRNA:   3'- aaAAGGUGG--GGGUUuuG--UGCU-----CCUAC- -5'
6142 3' -50.5 NC_001826.1 + 118901 0.66 0.978985
Target:  5'- --gUCCAgCCCCCG--GCAgGGGGGc- -3'
miRNA:   3'- aaaAGGU-GGGGGUuuUGUgCUCCUac -5'
6142 3' -50.5 NC_001826.1 + 119085 0.67 0.973736
Target:  5'- ---gCUACCCCCGAGgaugGCGCaGGGGGg- -3'
miRNA:   3'- aaaaGGUGGGGGUUU----UGUG-CUCCUac -5'
6142 3' -50.5 NC_001826.1 + 83493 0.67 0.973736
Target:  5'- ---aCCAUCCUuauagCAAAACAUGGGGGUa -3'
miRNA:   3'- aaaaGGUGGGG-----GUUUUGUGCUCCUAc -5'
6142 3' -50.5 NC_001826.1 + 53776 0.67 0.970781
Target:  5'- --cUCCGCCCCCuccuGACAgGccuGGGAa- -3'
miRNA:   3'- aaaAGGUGGGGGuu--UUGUgC---UCCUac -5'
6142 3' -50.5 NC_001826.1 + 37801 0.68 0.9605
Target:  5'- -gUUCCAacaguacauuuCCCCCAAAACAUGAuccucagcaggGGAUu -3'
miRNA:   3'- aaAAGGU-----------GGGGGUUUUGUGCU-----------CCUAc -5'
6142 3' -50.5 NC_001826.1 + 29633 0.68 0.947958
Target:  5'- cUUUgCGCCCUCGgcAAACGCcgGGGGGUGg -3'
miRNA:   3'- aAAAgGUGGGGGU--UUUGUG--CUCCUAC- -5'
6142 3' -50.5 NC_001826.1 + 77695 0.68 0.943251
Target:  5'- --gUCUACCCCUgcGAGACcauugUGAGGAUGu -3'
miRNA:   3'- aaaAGGUGGGGG--UUUUGu----GCUCCUAC- -5'
6142 3' -50.5 NC_001826.1 + 4404 0.69 0.933028
Target:  5'- --gUCUGCCCCCAGAuguaGAGGAa- -3'
miRNA:   3'- aaaAGGUGGGGGUUUugugCUCCUac -5'
6142 3' -50.5 NC_001826.1 + 118488 0.69 0.91565
Target:  5'- ---gCCACCCUgGAGGCuCGGGGAa- -3'
miRNA:   3'- aaaaGGUGGGGgUUUUGuGCUCCUac -5'
6142 3' -50.5 NC_001826.1 + 118778 0.71 0.857631
Target:  5'- ---cCgGCCCCgGGGACGCGGGGGa- -3'
miRNA:   3'- aaaaGgUGGGGgUUUUGUGCUCCUac -5'
6142 3' -50.5 NC_001826.1 + 118747 0.75 0.680648
Target:  5'- ---cCCGCCCCCGGGGguCGGGGGUc -3'
miRNA:   3'- aaaaGGUGGGGGUUUUguGCUCCUAc -5'
6142 3' -50.5 NC_001826.1 + 33453 0.78 0.497707
Target:  5'- --cUCCACCCCCAGAAC---GGGAUGu -3'
miRNA:   3'- aaaAGGUGGGGGUUUUGugcUCCUAC- -5'
6142 3' -50.5 NC_001826.1 + 93498 1.07 0.008668
Target:  5'- uUUUUCCACCCCCAAAACACGAGGAUGa -3'
miRNA:   3'- -AAAAGGUGGGGGUUUUGUGCUCCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.