miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6142 5' -59.9 NC_001826.1 + 39052 0.66 0.599834
Target:  5'- gGCGGCCUUUCAAuuaggggguucUCCCAGGGggUGGAa -3'
miRNA:   3'- aUGUCGGGGAGUU-----------GGGGUCCCa-GCUU- -5'
6142 5' -59.9 NC_001826.1 + 70472 0.67 0.548796
Target:  5'- aGCuGaCCCUUCAACCCCAGaGUCa-- -3'
miRNA:   3'- aUGuC-GGGGAGUUGGGGUCcCAGcuu -5'
6142 5' -59.9 NC_001826.1 + 85666 0.67 0.548796
Target:  5'- cACGGCCa-UCAuCCCCAaGGUCGAAc -3'
miRNA:   3'- aUGUCGGggAGUuGGGGUcCCAGCUU- -5'
6142 5' -59.9 NC_001826.1 + 119182 0.69 0.470397
Target:  5'- gGC-GCCCC-CAGCCCC-GGGUCu-- -3'
miRNA:   3'- aUGuCGGGGaGUUGGGGuCCCAGcuu -5'
6142 5' -59.9 NC_001826.1 + 28954 0.69 0.451678
Target:  5'- -gUAGCUCaggcCAGCCCCuGGGGUCGAGa -3'
miRNA:   3'- auGUCGGGga--GUUGGGG-UCCCAGCUU- -5'
6142 5' -59.9 NC_001826.1 + 43786 0.69 0.451678
Target:  5'- -uCAGuCCCCUaaCAGCCCCAGaGGaCGAAc -3'
miRNA:   3'- auGUC-GGGGA--GUUGGGGUC-CCaGCUU- -5'
6142 5' -59.9 NC_001826.1 + 93699 0.69 0.441558
Target:  5'- gGCGaCCCCcgacgaguauuuuUCGACCCUGGGGUUGAGg -3'
miRNA:   3'- aUGUcGGGG-------------AGUUGGGGUCCCAGCUU- -5'
6142 5' -59.9 NC_001826.1 + 118757 0.69 0.433375
Target:  5'- --aAGCCCCgggcCcGCCCCcgGGGGUCGGGg -3'
miRNA:   3'- augUCGGGGa---GuUGGGG--UCCCAGCUU- -5'
6142 5' -59.9 NC_001826.1 + 29109 0.72 0.311124
Target:  5'- cGCAGCaUUCUCGACCCCAGGGg---- -3'
miRNA:   3'- aUGUCG-GGGAGUUGGGGUCCCagcuu -5'
6142 5' -59.9 NC_001826.1 + 118723 0.77 0.140718
Target:  5'- --gAGCCCCUCuuCCCCccuggGGGGUCGAGc -3'
miRNA:   3'- augUCGGGGAGuuGGGG-----UCCCAGCUU- -5'
6142 5' -59.9 NC_001826.1 + 93534 1.04 0.001598
Target:  5'- uUACAGCCCCUCAACCCCAGGGUCGAAa -3'
miRNA:   3'- -AUGUCGGGGAGUUGGGGUCCCAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.