miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6143 3' -44.8 NC_001826.1 + 69947 0.66 0.999984
Target:  5'- --gUGAGGAGGGUU--UAGGuguugcGGGUAGa -3'
miRNA:   3'- gaaACUCCUUCUAGuuGUCU------UCCAUC- -5'
6143 3' -44.8 NC_001826.1 + 7540 0.66 0.99997
Target:  5'- --cUGAGGAcauagCAGCuGGGAGGUGGu -3'
miRNA:   3'- gaaACUCCUucua-GUUG-UCUUCCAUC- -5'
6143 3' -44.8 NC_001826.1 + 68830 0.67 0.999944
Target:  5'- --aUGAGGAGGuaaauuauUCuuCAGAcGGUAGu -3'
miRNA:   3'- gaaACUCCUUCu-------AGuuGUCUuCCAUC- -5'
6143 3' -44.8 NC_001826.1 + 69353 0.68 0.999825
Target:  5'- -aUUGGGGGA-----ACGGAGGGUGGg -3'
miRNA:   3'- gaAACUCCUUcuaguUGUCUUCCAUC- -5'
6143 3' -44.8 NC_001826.1 + 70514 0.68 0.999825
Target:  5'- -gUUGAGGAgcugggGGGUCugUGGggGGUGu -3'
miRNA:   3'- gaAACUCCU------UCUAGuuGUCuuCCAUc -5'
6143 3' -44.8 NC_001826.1 + 34304 0.68 0.999706
Target:  5'- ---aGAGGggGAgaaaccCAGAAGGUGu -3'
miRNA:   3'- gaaaCUCCuuCUaguu--GUCUUCCAUc -5'
6143 3' -44.8 NC_001826.1 + 45068 0.68 0.999624
Target:  5'- ----aGGGAGGGUCAGCAuccacuuguGGAGGUGu -3'
miRNA:   3'- gaaacUCCUUCUAGUUGU---------CUUCCAUc -5'
6143 3' -44.8 NC_001826.1 + 24428 0.72 0.990673
Target:  5'- ----cGGGAGGA--GACGGAGGGUGGg -3'
miRNA:   3'- gaaacUCCUUCUagUUGUCUUCCAUC- -5'
6143 3' -44.8 NC_001826.1 + 19299 0.72 0.987672
Target:  5'- ---cGAGGAaacuAGggCGACgAGAGGGUAGa -3'
miRNA:   3'- gaaaCUCCU----UCuaGUUG-UCUUCCAUC- -5'
6143 3' -44.8 NC_001826.1 + 70645 0.76 0.926144
Target:  5'- -gUUGAGGAgcugggGGAUCcGCGGggGGUGu -3'
miRNA:   3'- gaAACUCCU------UCUAGuUGUCuuCCAUc -5'
6143 3' -44.8 NC_001826.1 + 23162 0.79 0.825656
Target:  5'- --gUGGGGAAGAcUC-ACGGggGGUGGa -3'
miRNA:   3'- gaaACUCCUUCU-AGuUGUCuuCCAUC- -5'
6143 3' -44.8 NC_001826.1 + 26514 0.83 0.633585
Target:  5'- -aUUGGGGAAGcAUcCGACAGggGGUGGu -3'
miRNA:   3'- gaAACUCCUUC-UA-GUUGUCuuCCAUC- -5'
6143 3' -44.8 NC_001826.1 + 94057 1.12 0.019977
Target:  5'- cCUUUGAGGAAGAUCAACAGAAGGUAGa -3'
miRNA:   3'- -GAAACUCCUUCUAGUUGUCUUCCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.