Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6145 | 5' | -54.7 | NC_001826.1 | + | 104559 | 0.66 | 0.919247 |
Target: 5'- aGGUuuaGAUGUAggagagacagaCGAUCCCgGUCCcccUCCa -3' miRNA: 3'- -CCGg--CUACAUa----------GCUAGGGgCAGG---AGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 41163 | 0.67 | 0.907395 |
Target: 5'- cGCCGcUGaca-GGuUCCCCGcCCUCCg -3' miRNA: 3'- cCGGCuACauagCU-AGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 6789 | 0.68 | 0.857829 |
Target: 5'- uGGCCGGgugccaaagugacUGUcaUGAUUCCCuacUCCUCCa -3' miRNA: 3'- -CCGGCU-------------ACAuaGCUAGGGGc--AGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 85163 | 0.72 | 0.67302 |
Target: 5'- aGGuuGAUGUcAUcCGggCCCUGUCCUUg -3' miRNA: 3'- -CCggCUACA-UA-GCuaGGGGCAGGAGg -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 27240 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 27280 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 27320 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 27360 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 27400 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 27440 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 27480 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 27200 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 27160 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 27120 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 27080 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 27040 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 26960 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 26921 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 26881 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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6145 | 5' | -54.7 | NC_001826.1 | + | 26801 | 0.68 | 0.880863 |
Target: 5'- aGCUGggGcccgGAUCCCCGaCCUCCc -3' miRNA: 3'- cCGGCuaCauagCUAGGGGCaGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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