miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6147 3' -53.8 NC_001826.1 + 68811 0.66 0.934055
Target:  5'- aAGAGAUuaaggGAGAGCGaugaGGAGGUa -3'
miRNA:   3'- gUCUCUGuaaggUUCUCGCg---CCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 81281 0.67 0.91138
Target:  5'- gCAGAGuaaGCAUUCCAuuGGGGUGCuccauuGGCa -3'
miRNA:   3'- -GUCUC---UGUAAGGU--UCUCGCGccu---CCG- -5'
6147 3' -53.8 NC_001826.1 + 70108 0.67 0.905076
Target:  5'- aGGGGugGUuguuUCCGGGGuUGUGGGGGUg -3'
miRNA:   3'- gUCUCugUA----AGGUUCUcGCGCCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 72573 0.67 0.898522
Target:  5'- aCAGAGGCcaggaaagccUUCUAGGgaGGgGCGGGGGUu -3'
miRNA:   3'- -GUCUCUGu---------AAGGUUC--UCgCGCCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 12716 0.67 0.898522
Target:  5'- uCAGAcGAaaaaa-GAGGGUGUGGAGGCa -3'
miRNA:   3'- -GUCU-CUguaaggUUCUCGCGCCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 106722 0.67 0.89172
Target:  5'- aCAGugcuGACA--UCAGcGAGUGUGGAGGUg -3'
miRNA:   3'- -GUCu---CUGUaaGGUU-CUCGCGCCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 25218 0.67 0.884674
Target:  5'- aAGAGGaggUCCuGGcAGCGaUGGAGGCc -3'
miRNA:   3'- gUCUCUguaAGGuUC-UCGC-GCCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 114099 0.68 0.862124
Target:  5'- cCAGAGGgGuUUCUAGGAuaGUaugugGCGGGGGCg -3'
miRNA:   3'- -GUCUCUgU-AAGGUUCU--CG-----CGCCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 118589 0.68 0.862124
Target:  5'- aGGGGGCuggggUCGGGGGaGUGGGGGCg -3'
miRNA:   3'- gUCUCUGuaa--GGUUCUCgCGCCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 78118 0.68 0.862124
Target:  5'- aCAGcAGACAUUCCucccacaauGAGUG-GGAGGa -3'
miRNA:   3'- -GUC-UCUGUAAGGuu-------CUCGCgCCUCCg -5'
6147 3' -53.8 NC_001826.1 + 28468 0.68 0.854156
Target:  5'- gAGGGACAcuUUCUAccaccguggguGGAgGCGCGGcGGCc -3'
miRNA:   3'- gUCUCUGU--AAGGU-----------UCU-CGCGCCuCCG- -5'
6147 3' -53.8 NC_001826.1 + 116959 0.68 0.854156
Target:  5'- gCAGAGGC--UCCAc-AGCGUGGccuGGGCg -3'
miRNA:   3'- -GUCUCUGuaAGGUucUCGCGCC---UCCG- -5'
6147 3' -53.8 NC_001826.1 + 92282 0.68 0.837581
Target:  5'- cCAGAGACAgcaCGAGuGGCugGUGGGGGUc -3'
miRNA:   3'- -GUCUCUGUaagGUUC-UCG--CGCCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 118891 0.68 0.837581
Target:  5'- cCGGGGG----UCGGGGGCGgGGGGGCu -3'
miRNA:   3'- -GUCUCUguaaGGUUCUCGCgCCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 70360 0.69 0.828991
Target:  5'- uGGAGACAcggUUUCGGGGGUa-GGGGGCu -3'
miRNA:   3'- gUCUCUGU---AAGGUUCUCGcgCCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 104632 0.71 0.692899
Target:  5'- gAGGGGCuggUCUuuuuGGAGCGCggcgucuuuuaGGAGGCa -3'
miRNA:   3'- gUCUCUGua-AGGu---UCUCGCG-----------CCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 118892 0.72 0.650852
Target:  5'- gCGGAGGgGgUCCAgcccccggcaggGGGGCGCGGcGGGCc -3'
miRNA:   3'- -GUCUCUgUaAGGU------------UCUCGCGCC-UCCG- -5'
6147 3' -53.8 NC_001826.1 + 118533 0.78 0.334513
Target:  5'- gAGGGGCGggggUCCGGGGG-GCGGGGGUg -3'
miRNA:   3'- gUCUCUGUa---AGGUUCUCgCGCCUCCG- -5'
6147 3' -53.8 NC_001826.1 + 106357 1.13 0.001987
Target:  5'- cCAGAGACAUUCCAAGAGCGCGGAGGCa -3'
miRNA:   3'- -GUCUCUGUAAGGUUCUCGCGCCUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.