miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6149 5' -63.9 NC_001826.1 + 119208 1.09 0.000356
Target:  5'- cUUCCGCCCAGCUAGGCCAGCGCGGCCa -3'
miRNA:   3'- -AAGGCGGGUCGAUCCGGUCGCGCCGG- -5'
6149 5' -63.9 NC_001826.1 + 5300 0.66 0.465266
Target:  5'- cUCUG-CUAGCaAGGCUGGCGC-GCCu -3'
miRNA:   3'- aAGGCgGGUCGaUCCGGUCGCGcCGG- -5'
6149 5' -63.9 NC_001826.1 + 28939 0.66 0.4472
Target:  5'- -aCUGCCCgcguguggguAGCUcAGGCCAGCcccuGgGGUCg -3'
miRNA:   3'- aaGGCGGG----------UCGA-UCCGGUCG----CgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 118901 0.68 0.355405
Target:  5'- gUCCaGCCCccGGCagggGGGCgCGGCG-GGCCc -3'
miRNA:   3'- aAGG-CGGG--UCGa---UCCG-GUCGCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 118952 0.68 0.347745
Target:  5'- -cCCGCCgCGGCccguccucAGGCCcgGGCgguaGCGGCCg -3'
miRNA:   3'- aaGGCGG-GUCGa-------UCCGG--UCG----CGCCGG- -5'
6149 5' -63.9 NC_001826.1 + 69478 0.69 0.311231
Target:  5'- --gUGCCCGGggcGGCCcuuGGUGCGGCCg -3'
miRNA:   3'- aagGCGGGUCgauCCGG---UCGCGCCGG- -5'
6149 5' -63.9 NC_001826.1 + 101094 0.69 0.290759
Target:  5'- gUCCGUCCAGUagcgAGGCgCGGCGCagaaugaGCCc -3'
miRNA:   3'- aAGGCGGGUCGa---UCCG-GUCGCGc------CGG- -5'
6149 5' -63.9 NC_001826.1 + 6336 0.71 0.224711
Target:  5'- aUCCaGgCCAGCUAGGUCAGCuaggaucaaGUGGUCc -3'
miRNA:   3'- aAGG-CgGGUCGAUCCGGUCG---------CGCCGG- -5'
6149 5' -63.9 NC_001826.1 + 72858 0.71 0.224711
Target:  5'- cUCuUGUCCAGCaGGGCUggaAGUGUGGCCu -3'
miRNA:   3'- aAG-GCGGGUCGaUCCGG---UCGCGCCGG- -5'
6149 5' -63.9 NC_001826.1 + 101868 0.72 0.175717
Target:  5'- gUUCCGCgguCUcuCUAGGCCggcgagcGGCGCGGCCg -3'
miRNA:   3'- -AAGGCG---GGucGAUCCGG-------UCGCGCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27093 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27053 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27013 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 26973 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 26933 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 119144 0.67 0.379091
Target:  5'- --gCGCCCcaGGCgcgggcgcaUGGcGCCccaGGCGCGGCCg -3'
miRNA:   3'- aagGCGGG--UCG---------AUC-CGG---UCGCGCCGG- -5'
6149 5' -63.9 NC_001826.1 + 118960 0.66 0.438313
Target:  5'- -cCCGCCCGGCcccccuccccGGGCC--CGgGGCCc -3'
miRNA:   3'- aaGGCGGGUCGa---------UCCGGucGCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 114711 0.66 0.4472
Target:  5'- aUgUGUCaUAGC-AGGCCAGCGCGGa- -3'
miRNA:   3'- aAgGCGG-GUCGaUCCGGUCGCGCCgg -5'
6149 5' -63.9 NC_001826.1 + 76716 0.66 0.4472
Target:  5'- gUUCGUCUAGCaugUGGGUCAGCaccaccaGGCCg -3'
miRNA:   3'- aAGGCGGGUCG---AUCCGGUCGcg-----CCGG- -5'
6149 5' -63.9 NC_001826.1 + 27652 0.69 0.311231
Target:  5'- aUCCGggcCCCAGCUcggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA------UCCGGUCgCgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.