miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6149 5' -63.9 NC_001826.1 + 27932 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27772 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27892 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27852 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27333 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27293 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 28105 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 26933 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 26973 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27013 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27053 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27093 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27253 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27213 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27173 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27133 0.68 0.324754
Target:  5'- aUCCGggcCCCAGCUcgggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA-------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 119102 0.69 0.318295
Target:  5'- -aCCGCCCGGgcCUgaggacGGGCCgcGGCG-GGCCg -3'
miRNA:   3'- aaGGCGGGUC--GA------UCCGG--UCGCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 69478 0.69 0.311231
Target:  5'- --gUGCCCGGggcGGCCcuuGGUGCGGCCg -3'
miRNA:   3'- aagGCGGGUCgauCCGG---UCGCGCCGG- -5'
6149 5' -63.9 NC_001826.1 + 27652 0.69 0.311231
Target:  5'- aUCCGggcCCCAGCUcggaggGGGCCGGgGaGGUCg -3'
miRNA:   3'- aAGGC---GGGUCGA------UCCGGUCgCgCCGG- -5'
6149 5' -63.9 NC_001826.1 + 101094 0.69 0.290759
Target:  5'- gUCCGUCCAGUagcgAGGCgCGGCGCagaaugaGCCc -3'
miRNA:   3'- aAGGCGGGUCGa---UCCG-GUCGCGc------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.