miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
615 3' -60.1 AC_000017.1 + 8247 0.66 0.377177
Target:  5'- cGUCUGGCU-GCUCGAGGggaguuacgguggaUCGGACCa -3'
miRNA:   3'- uCAGGCCGGcCGGGCUCUg-------------AGCUUGG- -5'
615 3' -60.1 AC_000017.1 + 12233 0.66 0.354163
Target:  5'- aGGUCCGGCCccagcugccuccagGGCgCGucGGCUUgGGGCCc -3'
miRNA:   3'- -UCAGGCCGG--------------CCGgGCu-CUGAG-CUUGG- -5'
615 3' -60.1 AC_000017.1 + 12511 0.67 0.316516
Target:  5'- gAG-CCGGuuGGCCUGuGGCUgcuGCCg -3'
miRNA:   3'- -UCaGGCCggCCGGGCuCUGAgcuUGG- -5'
615 3' -60.1 AC_000017.1 + 2282 0.68 0.300697
Target:  5'- gGGUCCaGGCCGGCUcuCGGGuuccaugggcucuGCUCcuGCCg -3'
miRNA:   3'- -UCAGG-CCGGCCGG--GCUC-------------UGAGcuUGG- -5'
615 3' -60.1 AC_000017.1 + 21891 0.69 0.255622
Target:  5'- uAGUUaacaCGGCCGGUCgCGAGACUgGGgguguacacuggaugGCCu -3'
miRNA:   3'- -UCAG----GCCGGCCGG-GCUCUGAgCU---------------UGG- -5'
615 3' -60.1 AC_000017.1 + 10239 0.69 0.246669
Target:  5'- cGGUCUGGuggcCCGGCUgCGAGAgCUCGGugUa -3'
miRNA:   3'- -UCAGGCC----GGCCGG-GCUCU-GAGCUugG- -5'
615 3' -60.1 AC_000017.1 + 5910 0.69 0.240435
Target:  5'- -cUUCGuGCUGGCCUG-GACgCGAGCCu -3'
miRNA:   3'- ucAGGC-CGGCCGGGCuCUGaGCUUGG- -5'
615 3' -60.1 AC_000017.1 + 25035 0.7 0.200408
Target:  5'- ---gCGcGCUGGCuuGAGACgcgCGAGCCu -3'
miRNA:   3'- ucagGC-CGGCCGggCUCUGa--GCUUGG- -5'
615 3' -60.1 AC_000017.1 + 10915 0.75 0.090617
Target:  5'- gAGUCgCGGgacccCCGGUUCGAGuCUCGGGCCg -3'
miRNA:   3'- -UCAG-GCC-----GGCCGGGCUCuGAGCUUGG- -5'
615 3' -60.1 AC_000017.1 + 10734 0.77 0.066341
Target:  5'- ---aCGGCCGGauaCGGGGCUCGAACCc -3'
miRNA:   3'- ucagGCCGGCCgg-GCUCUGAGCUUGG- -5'
615 3' -60.1 AC_000017.1 + 10992 1.11 0.000148
Target:  5'- cAGUCCGGCCGGCCCGAGACUCGAACCg -3'
miRNA:   3'- -UCAGGCCGGCCGGGCUCUGAGCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.