miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
615 5' -45.8 AC_000017.1 + 10957 1.17 0.002084
Target:  5'- cGCGACUCAACCCUUGGAAAAUAACCCu -3'
miRNA:   3'- -CGCUGAGUUGGGAACCUUUUAUUGGG- -5'
615 5' -45.8 AC_000017.1 + 35373 0.71 0.859901
Target:  5'- aGCGACcgaaaUAGCCCg-GGGGAAUAcauACCCg -3'
miRNA:   3'- -CGCUGa----GUUGGGaaCCUUUUAU---UGGG- -5'
615 5' -45.8 AC_000017.1 + 11348 0.71 0.859901
Target:  5'- cGCGugUCAcgcuucagcugcACCCUUGGGu-GUcGCUCa -3'
miRNA:   3'- -CGCugAGU------------UGGGAACCUuuUAuUGGG- -5'
615 5' -45.8 AC_000017.1 + 5485 0.71 0.86965
Target:  5'- cGCGGCaUGGCCCUUGGcgcgcagcuuGCCCu -3'
miRNA:   3'- -CGCUGaGUUGGGAACCuuuuau----UGGG- -5'
615 5' -45.8 AC_000017.1 + 5368 0.71 0.884827
Target:  5'- cGCuGACgagGACCCUgcgcccgUGGAAAgacAUGACCCu -3'
miRNA:   3'- -CG-CUGag-UUGGGA-------ACCUUU---UAUUGGG- -5'
615 5' -45.8 AC_000017.1 + 1983 0.7 0.90126
Target:  5'- aUGAC-CuuCUCUUGGAAAagcgccugGUGACCCa -3'
miRNA:   3'- cGCUGaGuuGGGAACCUUU--------UAUUGGG- -5'
615 5' -45.8 AC_000017.1 + 11328 0.66 0.983997
Target:  5'- cGCGGCagAACCUguuucgugaccgcgaGGGAGAggAGCCCg -3'
miRNA:   3'- -CGCUGagUUGGGaa-------------CCUUUUa-UUGGG- -5'
615 5' -45.8 AC_000017.1 + 33126 0.66 0.984637
Target:  5'- uUGGCUCGACaggaaaCCgugUGGAAuAUAACaCCu -3'
miRNA:   3'- cGCUGAGUUG------GGa--ACCUUuUAUUG-GG- -5'
615 5' -45.8 AC_000017.1 + 3215 0.66 0.984637
Target:  5'- cUGGC-CAGgCCUUGcGAGAGUGGCUg -3'
miRNA:   3'- cGCUGaGUUgGGAAC-CUUUUAUUGGg -5'
615 5' -45.8 AC_000017.1 + 7138 0.66 0.984637
Target:  5'- cGCGGuCUUuccaguACUCUUGGAucggaAACCCg -3'
miRNA:   3'- -CGCU-GAGu-----UGGGAACCUuuua-UUGGG- -5'
615 5' -45.8 AC_000017.1 + 27588 0.66 0.99002
Target:  5'- gGCGAC-CGcACCCUgugacGAAAGccGCCCg -3'
miRNA:   3'- -CGCUGaGU-UGGGAac---CUUUUauUGGG- -5'
615 5' -45.8 AC_000017.1 + 5962 0.66 0.99002
Target:  5'- aGCGAgUgGACCCccuagUGGAcAAcGACCg -3'
miRNA:   3'- -CGCUgAgUUGGGa----ACCUuUUaUUGGg -5'
615 5' -45.8 AC_000017.1 + 14761 0.65 0.990751
Target:  5'- aGCGACaUCGggguaaaguuugacACCCgcaacuucagacUGGGGuuUGACCCa -3'
miRNA:   3'- -CGCUG-AGU--------------UGGGa-----------ACCUUuuAUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.