Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6153 | 3' | -57.4 | NC_001829.1 | + | 1177 | 0.66 | 0.092889 |
Target: 5'- -uGCCUCCAaaaucAUGaGCCugacaaagACGGCUccGGACUa -3' miRNA: 3'- ccUGGAGGU-----UAC-CGG--------UGCCGA--CCUGG- -5' |
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6153 | 3' | -57.4 | NC_001829.1 | + | 1929 | 0.66 | 0.083925 |
Target: 5'- cGGAagCUCCGGUGGacuaCGCGGaCaGGuACCa -3' miRNA: 3'- -CCUg-GAGGUUACCg---GUGCC-GaCC-UGG- -5' |
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6153 | 3' | -57.4 | NC_001829.1 | + | 1135 | 0.66 | 0.080302 |
Target: 5'- -cGCCUCCAacucgcggucacaaAUcaaGGCCGCG-CUGGACa -3' miRNA: 3'- ccUGGAGGU--------------UA---CCGGUGCcGACCUGg -5' |
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6153 | 3' | -57.4 | NC_001829.1 | + | 860 | 0.7 | 0.036752 |
Target: 5'- cGAgCUCCAGUGGgCGUGGacuaacaUGGACCa -3' miRNA: 3'- cCUgGAGGUUACCgGUGCCg------ACCUGG- -5' |
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6153 | 3' | -57.4 | NC_001829.1 | + | 605 | 0.74 | 0.01959 |
Target: 5'- aGGGCCUCCGG-GGCCuuacucacGCGGCgccacucGACCa -3' miRNA: 3'- -CCUGGAGGUUaCCGG--------UGCCGac-----CUGG- -5' |
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6153 | 3' | -57.4 | NC_001829.1 | + | 1305 | 0.74 | 0.017023 |
Target: 5'- cGGCCUCCGucuuCCugGGCUGGGCg -3' miRNA: 3'- cCUGGAGGUuaccGGugCCGACCUGg -5' |
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6153 | 3' | -57.4 | NC_001829.1 | + | 3813 | 1.14 | 6e-06 |
Target: 5'- cGGACCUCCAAUGGCCACGGCUGGACCu -3' miRNA: 3'- -CCUGGAGGUUACCGGUGCCGACCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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