miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
616 3' -60 AC_000017.1 + 7314 0.66 0.354875
Target:  5'- cUCCGGaagGCCGCGCaGGcauacGCGcUACCCg -3'
miRNA:   3'- -AGGUCg--CGGUGCGaCC-----CGCaAUGGGg -5'
616 3' -60 AC_000017.1 + 24012 0.66 0.354875
Target:  5'- aCC-GCGuCCGCGCUcGGGgGUgguuucgcgcUGCUCCu -3'
miRNA:   3'- aGGuCGC-GGUGCGA-CCCgCA----------AUGGGG- -5'
616 3' -60 AC_000017.1 + 13331 0.66 0.338265
Target:  5'- cCCAGCGUgGCGCUGGaCaugACCgCg -3'
miRNA:   3'- aGGUCGCGgUGCGACCcGcaaUGGgG- -5'
616 3' -60 AC_000017.1 + 16031 0.67 0.30981
Target:  5'- gCCcGCGCaCGCGCacUGGGUGUuggucggagcgcuucUugGCCCCg -3'
miRNA:   3'- aGGuCGCG-GUGCG--ACCCGCA---------------A--UGGGG- -5'
616 3' -60 AC_000017.1 + 8719 0.67 0.306763
Target:  5'- cUCCuGC-CCGCGC-GcGGCGccgacgUGCCCCu -3'
miRNA:   3'- -AGGuCGcGGUGCGaC-CCGCa-----AUGGGG- -5'
616 3' -60 AC_000017.1 + 8661 0.68 0.277556
Target:  5'- gUCGGCGCCGCGCgcGGGCaGgagcuggUGCUgCg -3'
miRNA:   3'- aGGUCGCGGUGCGa-CCCG-Ca------AUGGgG- -5'
616 3' -60 AC_000017.1 + 11248 0.68 0.263804
Target:  5'- cCCGGCGCCGCGg-GGGUucGUaaucaccaucUGCCgCCg -3'
miRNA:   3'- aGGUCGCGGUGCgaCCCG--CA----------AUGG-GG- -5'
616 3' -60 AC_000017.1 + 12263 0.68 0.25061
Target:  5'- gCCAGCG-CGCGC-GGGUGccACCgCCa -3'
miRNA:   3'- aGGUCGCgGUGCGaCCCGCaaUGG-GG- -5'
616 3' -60 AC_000017.1 + 14212 0.7 0.197866
Target:  5'- -gCGGCGCCaguggcggcgGCGCUGGGUu---CCCCc -3'
miRNA:   3'- agGUCGCGG----------UGCGACCCGcaauGGGG- -5'
616 3' -60 AC_000017.1 + 16283 0.71 0.172947
Target:  5'- gCCGcCGCCGCGCguUGGGCGgcagUGCCg- -3'
miRNA:   3'- aGGUcGCGGUGCG--ACCCGCa---AUGGgg -5'
616 3' -60 AC_000017.1 + 22733 0.72 0.150867
Target:  5'- aCUcGCG-CGCGCaGGGCGgagGCCCCa -3'
miRNA:   3'- aGGuCGCgGUGCGaCCCGCaa-UGGGG- -5'
616 3' -60 AC_000017.1 + 4285 0.76 0.074566
Target:  5'- aUCCAGuCGUagcaggaGCGCUGGGCGUggUGCCUa -3'
miRNA:   3'- -AGGUC-GCGg------UGCGACCCGCA--AUGGGg -5'
616 3' -60 AC_000017.1 + 13383 1.12 0.000115
Target:  5'- gUCCAGCGCCACGCUGGGCGUUACCCCg -3'
miRNA:   3'- -AGGUCGCGGUGCGACCCGCAAUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.