miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
616 5' -52.8 AC_000017.1 + 25461 0.66 0.700981
Target:  5'- uUCAGGUUGc-GCUCcuccAgGCaCUGCUGCc -3'
miRNA:   3'- -AGUCCAAUucCGAG----UgCGaGACGACG- -5'
616 5' -52.8 AC_000017.1 + 25102 0.67 0.670981
Target:  5'- gUCGGc---AGGCUCGCGCgUCUcaagccagcgcgccaGCUGCu -3'
miRNA:   3'- -AGUCcaauUCCGAGUGCG-AGA---------------CGACG- -5'
616 5' -52.8 AC_000017.1 + 12761 0.67 0.643035
Target:  5'- cCAGGUUGcccuGCUgcugcgCGCGCUCacGCUGCg -3'
miRNA:   3'- aGUCCAAUuc--CGA------GUGCGAGa-CGACG- -5'
616 5' -52.8 AC_000017.1 + 33249 0.67 0.62786
Target:  5'- aUCAGGaUAGGGCgguggugcugcagcaGCGCgcgaauaaaCUGCUGCc -3'
miRNA:   3'- -AGUCCaAUUCCGag-------------UGCGa--------GACGACG- -5'
616 5' -52.8 AC_000017.1 + 26929 0.67 0.618524
Target:  5'- aCGGGUUcguuGGGCgccagacgcaGCGCUCcuccuccUGCUGCu -3'
miRNA:   3'- aGUCCAAu---UCCGag--------UGCGAG-------ACGACG- -5'
616 5' -52.8 AC_000017.1 + 5238 0.68 0.550292
Target:  5'- gCGGGUUGGGGCg---GCUUUcGCUGUa -3'
miRNA:   3'- aGUCCAAUUCCGagugCGAGA-CGACG- -5'
616 5' -52.8 AC_000017.1 + 10098 0.69 0.537792
Target:  5'- cCAGGUc--GGCgacaaCGCGCUCggcuaauauggccUGCUGCa -3'
miRNA:   3'- aGUCCAauuCCGa----GUGCGAG-------------ACGACG- -5'
616 5' -52.8 AC_000017.1 + 5342 0.71 0.420778
Target:  5'- gUCAcGGUgAAGGggUGCGCUCcggGCUGCg -3'
miRNA:   3'- -AGU-CCAaUUCCgaGUGCGAGa--CGACG- -5'
616 5' -52.8 AC_000017.1 + 2267 0.71 0.420778
Target:  5'- cUCGGGUUccauGGGCUC-UGCUcCUGCcGCc -3'
miRNA:   3'- -AGUCCAAu---UCCGAGuGCGA-GACGaCG- -5'
616 5' -52.8 AC_000017.1 + 12419 0.72 0.363261
Target:  5'- -uGGaGUUAAGGCcggacggCugGCUCUGCaGCg -3'
miRNA:   3'- agUC-CAAUUCCGa------GugCGAGACGaCG- -5'
616 5' -52.8 AC_000017.1 + 1312 0.73 0.303355
Target:  5'- gCAGGUUccGGUUCugGCUCggGCUcagGCu -3'
miRNA:   3'- aGUCCAAuuCCGAGugCGAGa-CGA---CG- -5'
616 5' -52.8 AC_000017.1 + 13349 1.14 0.000406
Target:  5'- aUCAGGUUAAGGCUCACGCUCUGCUGCa -3'
miRNA:   3'- -AGUCCAAUUCCGAGUGCGAGACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.