miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6171 3' -55.6 NC_001837.1 + 6155 0.66 0.210245
Target:  5'- aGUAGaacGCCGAGCgCGaCACCcGCCACc -3'
miRNA:   3'- -CGUUgu-UGGUUCG-GCgGUGGuCGGUG- -5'
6171 3' -55.6 NC_001837.1 + 8371 0.66 0.208323
Target:  5'- cGCAGCcgGAuguuucuuccccucCCAGGCaGCCACCAGCg-- -3'
miRNA:   3'- -CGUUG--UU--------------GGUUCGgCGGUGGUCGgug -5'
6171 3' -55.6 NC_001837.1 + 8486 0.66 0.197712
Target:  5'- uGCAcaaaGCAugCAcccggacggGGUCGUCACUagcGGCCGCg -3'
miRNA:   3'- -CGU----UGUugGU---------UCGGCGGUGG---UCGGUG- -5'
6171 3' -55.6 NC_001837.1 + 8422 0.66 0.185836
Target:  5'- aGCuGCAAUCuucGCgGCCGCUAGUgACg -3'
miRNA:   3'- -CGuUGUUGGuu-CGgCGGUGGUCGgUG- -5'
6171 3' -55.6 NC_001837.1 + 2917 0.68 0.149102
Target:  5'- -aGGCAACC--GCCcCCGCCGGCCu- -3'
miRNA:   3'- cgUUGUUGGuuCGGcGGUGGUCGGug -5'
6171 3' -55.6 NC_001837.1 + 2381 0.68 0.139441
Target:  5'- ---cCGACCAAGCa-CCACCgaccccgAGCCACa -3'
miRNA:   3'- cguuGUUGGUUCGgcGGUGG-------UCGGUG- -5'
6171 3' -55.6 NC_001837.1 + 218 0.69 0.123009
Target:  5'- -uGugGACCGuGCCGCCACgAcCCGCu -3'
miRNA:   3'- cgUugUUGGUuCGGCGGUGgUcGGUG- -5'
6171 3' -55.6 NC_001837.1 + 4347 0.69 0.111612
Target:  5'- cCAGCAACCGGGCaCGUC-CCAuGCC-Ca -3'
miRNA:   3'- cGUUGUUGGUUCG-GCGGuGGU-CGGuG- -5'
6171 3' -55.6 NC_001837.1 + 3233 0.69 0.111612
Target:  5'- --cGCAACCGcuCUGCCGCUGGCCGu -3'
miRNA:   3'- cguUGUUGGUucGGCGGUGGUCGGUg -5'
6171 3' -55.6 NC_001837.1 + 2672 0.72 0.072773
Target:  5'- gGCAGCGcaccucuuGCgAAGUgcauCGCCACCAGCaCGCa -3'
miRNA:   3'- -CGUUGU--------UGgUUCG----GCGGUGGUCG-GUG- -5'
6171 3' -55.6 NC_001837.1 + 6409 0.72 0.070393
Target:  5'- gGUAGCGACCAAGgCGgacgCACCAGUCAa -3'
miRNA:   3'- -CGUUGUUGGUUCgGCg---GUGGUCGGUg -5'
6171 3' -55.6 NC_001837.1 + 5532 0.73 0.059574
Target:  5'- cCGACAGCUu--CCGCCACCGGCUucACa -3'
miRNA:   3'- cGUUGUUGGuucGGCGGUGGUCGG--UG- -5'
6171 3' -55.6 NC_001837.1 + 3147 0.74 0.044022
Target:  5'- uGUGGCAcCCAA-CCGCuCACCAGCCAUc -3'
miRNA:   3'- -CGUUGUuGGUUcGGCG-GUGGUCGGUG- -5'
6171 3' -55.6 NC_001837.1 + 2997 1.01 0.000253
Target:  5'- aGCAGCAaugucaggccaaaACCAAGCCGCCACCAGCCACa -3'
miRNA:   3'- -CGUUGU-------------UGGUUCGGCGGUGGUCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.