miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
618 3' -64.5 AC_000017.1 + 13157 0.66 0.229769
Target:  5'- aGCCGCgCGCUGGGGCa---GGaGGACa -3'
miRNA:   3'- aCGGUG-GCGGCUCCGcuggCC-CCUGc -5'
618 3' -64.5 AC_000017.1 + 27215 0.66 0.212931
Target:  5'- gUGCUGgCGCCGGGuGUGGCCGcuGGaGAUGa -3'
miRNA:   3'- -ACGGUgGCGGCUC-CGCUGGC--CC-CUGC- -5'
618 3' -64.5 AC_000017.1 + 8984 0.66 0.202304
Target:  5'- cGCCACCGUgGA-GCGAgCCGGacGCGg -3'
miRNA:   3'- aCGGUGGCGgCUcCGCU-GGCCccUGC- -5'
618 3' -64.5 AC_000017.1 + 12163 0.68 0.155853
Target:  5'- aGCCgACgCGCCcugGAGGCaGCUGGGGcCGg -3'
miRNA:   3'- aCGG-UG-GCGG---CUCCGcUGGCCCCuGC- -5'
618 3' -64.5 AC_000017.1 + 26240 0.7 0.109955
Target:  5'- gGCUGCUGCUGAuagggcugcGGCGGCgGGGGAa- -3'
miRNA:   3'- aCGGUGGCGGCU---------CCGCUGgCCCCUgc -5'
618 3' -64.5 AC_000017.1 + 11130 0.71 0.101325
Target:  5'- uUGCCGCUGCUGAGGag---GGGGGCGc -3'
miRNA:   3'- -ACGGUGGCGGCUCCgcuggCCCCUGC- -5'
618 3' -64.5 AC_000017.1 + 23831 0.73 0.066986
Target:  5'- -uCCGCCGCCGAGGUugauGGCCGcGGGCu -3'
miRNA:   3'- acGGUGGCGGCUCCG----CUGGCcCCUGc -5'
618 3' -64.5 AC_000017.1 + 23918 0.73 0.059915
Target:  5'- cGCCGCCucaGCCGcuuuuuuggGGGCGcGCgGGGGGCGg -3'
miRNA:   3'- aCGGUGG---CGGC---------UCCGC-UGgCCCCUGC- -5'
618 3' -64.5 AC_000017.1 + 10376 0.74 0.055091
Target:  5'- gGCCAgCguagggugGCCGGGGCu-CCGGGGGCGa -3'
miRNA:   3'- aCGGUgG--------CGGCUCCGcuGGCCCCUGC- -5'
618 3' -64.5 AC_000017.1 + 16284 0.76 0.035101
Target:  5'- gGCCGCCGCCGcgcguuGGGCGgcaguGCCGGGucGGCGg -3'
miRNA:   3'- aCGGUGGCGGC------UCCGC-----UGGCCC--CUGC- -5'
618 3' -64.5 AC_000017.1 + 17322 1.07 0.000119
Target:  5'- cUGCCACCGCCGAGGCGACCGGGGACGu -3'
miRNA:   3'- -ACGGUGGCGGCUCCGCUGGCCCCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.