miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6183 5' -52.1 NC_001837.1 + 183 0.66 0.380054
Target:  5'- aGGGAaGCGGUcaccgggauaaGCcuGCCCUAUAGCg -3'
miRNA:   3'- cCUCUaCGUCA-----------CGucUGGGAUAUCGg -5'
6183 5' -52.1 NC_001837.1 + 45 0.66 0.380054
Target:  5'- uGAGGUGguGggGCGGuuCCg--GGCCu -3'
miRNA:   3'- cCUCUACguCa-CGUCugGGauaUCGG- -5'
6183 5' -52.1 NC_001837.1 + 3209 0.66 0.359661
Target:  5'- cGGcAGA-GCGGuUGCGGgaaugggguuuuGCCCUAgAGCCc -3'
miRNA:   3'- -CC-UCUaCGUC-ACGUC------------UGGGAUaUCGG- -5'
6183 5' -52.1 NC_001837.1 + 5529 0.67 0.312096
Target:  5'- uGGAGAcUG-AGUGUggcugGGGCCCcAUGGCUg -3'
miRNA:   3'- -CCUCU-ACgUCACG-----UCUGGGaUAUCGG- -5'
6183 5' -52.1 NC_001837.1 + 7516 0.68 0.253767
Target:  5'- cGAacUGCAG-GCGGACUCUcUAGCUg -3'
miRNA:   3'- cCUcuACGUCaCGUCUGGGAuAUCGG- -5'
6183 5' -52.1 NC_001837.1 + 7060 1.14 0.000063
Target:  5'- gGGAGAUGCAGUGCAGACCCUAUAGCCu -3'
miRNA:   3'- -CCUCUACGUCACGUCUGGGAUAUCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.