Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6186 | 5' | -48.2 | NC_001837.1 | + | 8405 | 1.1 | 0.000395 |
Target: 5'- uUGACGAAUCAAAGCAAGUGGCAUCCAc -3' miRNA: 3'- -ACUGCUUAGUUUCGUUCACCGUAGGU- -5' |
|||||||
6186 | 5' | -48.2 | NC_001837.1 | + | 1106 | 0.72 | 0.255489 |
Target: 5'- aGugGugggCGAGGCAcagGGUGGCAUCUu -3' miRNA: 3'- aCugCuua-GUUUCGU---UCACCGUAGGu -5' |
|||||||
6186 | 5' | -48.2 | NC_001837.1 | + | 7383 | 0.67 | 0.531909 |
Target: 5'- cUGACGuuUCAAGGCu--UGGCAUgCu -3' miRNA: 3'- -ACUGCuuAGUUUCGuucACCGUAgGu -5' |
|||||||
6186 | 5' | -48.2 | NC_001837.1 | + | 9496 | 0.66 | 0.571107 |
Target: 5'- --uCGGAU-AGAGCGGGUGGCggCCu -3' miRNA: 3'- acuGCUUAgUUUCGUUCACCGuaGGu -5' |
|||||||
6186 | 5' | -48.2 | NC_001837.1 | + | 6693 | 0.66 | 0.584339 |
Target: 5'- aGACuGGAUUGAGGCGuuGGUGGUcUCUg -3' miRNA: 3'- aCUG-CUUAGUUUCGU--UCACCGuAGGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home