miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
619 3' -50 AC_000017.1 + 16067 0.66 0.845419
Target:  5'- --cGGCCGcguuuguGCGCGCcCCAGGGgcgcggUAGUg -3'
miRNA:   3'- uuaCUGGU-------UGCGCGaGGUUCCa-----AUUA- -5'
619 3' -50 AC_000017.1 + 27782 0.66 0.826937
Target:  5'- cAAUGccuCCGgaGCGCgGCUCCGAGGaUGAg -3'
miRNA:   3'- -UUACu--GGU--UGCG-CGAGGUUCCaAUUa -5'
619 3' -50 AC_000017.1 + 6322 0.69 0.657615
Target:  5'- --cGAUCGGCGCGCUCCuuGGc---- -3'
miRNA:   3'- uuaCUGGUUGCGCGAGGuuCCaauua -5'
619 3' -50 AC_000017.1 + 25894 0.69 0.657615
Target:  5'- -cUGACgAAaagucCGCgGCUCCGGGGUUGAa -3'
miRNA:   3'- uuACUGgUU-----GCG-CGAGGUUCCAAUUa -5'
619 3' -50 AC_000017.1 + 10375 0.69 0.633473
Target:  5'- --gGGCCAGCGUaggguggccgggGCUCCGGGGgcGAg -3'
miRNA:   3'- uuaCUGGUUGCG------------CGAGGUUCCaaUUa -5'
619 3' -50 AC_000017.1 + 23822 0.7 0.585272
Target:  5'- -uUGGCCAAaucCGCcgCCGAGGUUGAUg -3'
miRNA:   3'- uuACUGGUUgc-GCGa-GGUUCCAAUUA- -5'
619 3' -50 AC_000017.1 + 23864 0.72 0.469407
Target:  5'- -uUGGCCAACGCGC-CCAAGa----- -3'
miRNA:   3'- uuACUGGUUGCGCGaGGUUCcaauua -5'
619 3' -50 AC_000017.1 + 20489 1.04 0.003199
Target:  5'- cAAUGACCAACGCGCUCCAAGGUUAAUg -3'
miRNA:   3'- -UUACUGGUUGCGCGAGGUUCCAAUUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.