miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6197 3' -61.8 NC_001844.1 + 143682 0.66 0.610546
Target:  5'- --cGCGCCCUCCCUgGCcggagGCCCGu -3'
miRNA:   3'- guaUGCGGGAGGGGgUGagg--CGGGUg -5'
6197 3' -61.8 NC_001844.1 + 115490 0.66 0.610546
Target:  5'- --aGCGagaucCCCUCUCCCGC-CUGCCCu- -3'
miRNA:   3'- guaUGC-----GGGAGGGGGUGaGGCGGGug -5'
6197 3' -61.8 NC_001844.1 + 113936 0.67 0.590789
Target:  5'- aCAUGCGggccaCCCUCaCCCCuCgggUCGCCUGCg -3'
miRNA:   3'- -GUAUGC-----GGGAG-GGGGuGa--GGCGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 117246 0.67 0.590789
Target:  5'- ---cCGCCUUCCCCgGCccCCGagcCCCGCg -3'
miRNA:   3'- guauGCGGGAGGGGgUGa-GGC---GGGUG- -5'
6197 3' -61.8 NC_001844.1 + 117177 0.68 0.503946
Target:  5'- gCAU-CGCCCgcucauaaCCCCGCUCCgggGCUCGCc -3'
miRNA:   3'- -GUAuGCGGGag------GGGGUGAGG---CGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 140482 0.69 0.475272
Target:  5'- --cAUGgCCUCUCCCagcuggggugguaGCUCCGcCCCACu -3'
miRNA:   3'- guaUGCgGGAGGGGG-------------UGAGGC-GGGUG- -5'
6197 3' -61.8 NC_001844.1 + 145314 0.7 0.414589
Target:  5'- ---cCGCCCacuaacCCgCCCACUaacCCGCCCACu -3'
miRNA:   3'- guauGCGGGa-----GG-GGGUGA---GGCGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 145458 0.7 0.414589
Target:  5'- ---cCGCCCacuaacCCgCCCACUaacCCGCCCACu -3'
miRNA:   3'- guauGCGGGa-----GG-GGGUGA---GGCGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 145422 0.7 0.414589
Target:  5'- ---cCGCCCacuaacCCgCCCACUaacCCGCCCACu -3'
miRNA:   3'- guauGCGGGa-----GG-GGGUGA---GGCGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 145386 0.7 0.414589
Target:  5'- ---cCGCCCacuaacCCgCCCACUaacCCGCCCACu -3'
miRNA:   3'- guauGCGGGa-----GG-GGGUGA---GGCGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 145350 0.7 0.414589
Target:  5'- ---cCGCCCacuaacCCgCCCACUaacCCGCCCACu -3'
miRNA:   3'- guauGCGGGa-----GG-GGGUGA---GGCGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 145278 0.7 0.414589
Target:  5'- ---cCGCCCacuaacCCgCCCACUaacCCGCCCACu -3'
miRNA:   3'- guauGCGGGa-----GG-GGGUGA---GGCGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 145242 0.7 0.414589
Target:  5'- ---cCGCCCacuaacCCgCCCACUaacCCGCCCACu -3'
miRNA:   3'- guauGCGGGa-----GG-GGGUGA---GGCGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 145206 0.7 0.414589
Target:  5'- ---cCGCCCacuaacCCgCCCACUaacCCGCCCACu -3'
miRNA:   3'- guauGCGGGa-----GG-GGGUGA---GGCGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 145170 0.7 0.414589
Target:  5'- ---cCGCCCacuaacCCgCCCACUaacCCGCCCACu -3'
miRNA:   3'- guauGCGGGa-----GG-GGGUGA---GGCGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 70712 0.71 0.368988
Target:  5'- --gACGCCCaUCUCCGCguuaaaggugcgugCCGCCCGCu -3'
miRNA:   3'- guaUGCGGGaGGGGGUGa-------------GGCGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 139973 0.71 0.365865
Target:  5'- --aACGCCUUCCCCUAgCUCUaCCCAa -3'
miRNA:   3'- guaUGCGGGAGGGGGU-GAGGcGGGUg -5'
6197 3' -61.8 NC_001844.1 + 119348 0.71 0.350525
Target:  5'- aGUGCGCCC-CCCCCACa-CGCaCACc -3'
miRNA:   3'- gUAUGCGGGaGGGGGUGagGCGgGUG- -5'
6197 3' -61.8 NC_001844.1 + 20236 0.73 0.256167
Target:  5'- -cUACGCCgC-CCgCCCACUCaGCCCACu -3'
miRNA:   3'- guAUGCGG-GaGG-GGGUGAGgCGGGUG- -5'
6197 3' -61.8 NC_001844.1 + 114574 0.75 0.197492
Target:  5'- --cACGCCaC-CCCCCggggACUCUGCCCGCg -3'
miRNA:   3'- guaUGCGG-GaGGGGG----UGAGGCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.