miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6197 5' -51.9 NC_001844.1 + 2352 1.15 0.002562
Target:  5'- aGCAUGGACCAAAAGCGGAGAAGGCGCa -3'
miRNA:   3'- -CGUACCUGGUUUUCGCCUCUUCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 140863 0.77 0.560219
Target:  5'- cGCG-GGGCuCGGGGGcCGGGGAAGGCGg -3'
miRNA:   3'- -CGUaCCUG-GUUUUC-GCCUCUUCCGCg -5'
6197 5' -51.9 NC_001844.1 + 143035 0.73 0.786608
Target:  5'- -aGUGGGCCAcAAGGCGGGGAugcgggAGGUcugGCu -3'
miRNA:   3'- cgUACCUGGU-UUUCGCCUCU------UCCG---CG- -5'
6197 5' -51.9 NC_001844.1 + 114791 0.72 0.823165
Target:  5'- ---aGGGgCAAGAGCGG-GAAgcGGCGCu -3'
miRNA:   3'- cguaCCUgGUUUUCGCCuCUU--CCGCG- -5'
6197 5' -51.9 NC_001844.1 + 53337 0.72 0.831865
Target:  5'- uGCAagUGGACCAAAccAGCGGGGuguaauAGGagaGUa -3'
miRNA:   3'- -CGU--ACCUGGUUU--UCGCCUCu-----UCCg--CG- -5'
6197 5' -51.9 NC_001844.1 + 114429 0.72 0.831865
Target:  5'- uGCAacGGGCCuccGGCcaGGGAGGGCGCg -3'
miRNA:   3'- -CGUa-CCUGGuuuUCGc-CUCUUCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 121460 0.7 0.886927
Target:  5'- aGCGUGGAgCcuAGGCGcacuGAccGGGCGCg -3'
miRNA:   3'- -CGUACCUgGuuUUCGCcu--CU--UCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 145530 0.7 0.893196
Target:  5'- -gGUGuGACCGGAAGCGGAagugacgcaagcgGAAGGgGa -3'
miRNA:   3'- cgUAC-CUGGUUUUCGCCU-------------CUUCCgCg -5'
6197 5' -51.9 NC_001844.1 + 5151 0.7 0.893881
Target:  5'- ---cGGACCGucuGGCGGGu--GGCGCu -3'
miRNA:   3'- cguaCCUGGUuu-UCGCCUcuuCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 138759 0.7 0.907053
Target:  5'- ---cGGugUgcguGUGGGGggGGCGCa -3'
miRNA:   3'- cguaCCugGuuuuCGCCUCuuCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 16762 0.7 0.907053
Target:  5'- aGCcUGGGCU---GGCaGAGuGGGCGCg -3'
miRNA:   3'- -CGuACCUGGuuuUCGcCUCuUCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 116302 0.69 0.93558
Target:  5'- cCAUGGcCCGGGucGGacgccccaccacCGGGGAGGGUGCg -3'
miRNA:   3'- cGUACCuGGUUU--UC------------GCCUCUUCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 113177 0.68 0.945216
Target:  5'- gGUAUcGGACgAGGAGgaCGGAGAAgacuGGUGCa -3'
miRNA:   3'- -CGUA-CCUGgUUUUC--GCCUCUU----CCGCG- -5'
6197 5' -51.9 NC_001844.1 + 105960 0.68 0.957808
Target:  5'- aGCAUGGACguGuuuGGGCG-AGGAcGCGCu -3'
miRNA:   3'- -CGUACCUGguU---UUCGCcUCUUcCGCG- -5'
6197 5' -51.9 NC_001844.1 + 65429 0.68 0.957808
Target:  5'- -aGUGGAgCGuAGAGCGGGGc--GCGCg -3'
miRNA:   3'- cgUACCUgGU-UUUCGCCUCuucCGCG- -5'
6197 5' -51.9 NC_001844.1 + 121869 0.68 0.957808
Target:  5'- -aGUGGGCgCAAAAaaGGAGGcGGGUGCu -3'
miRNA:   3'- cgUACCUG-GUUUUcgCCUCU-UCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 80873 0.68 0.961523
Target:  5'- gGCAUcagcuGACCAAAgauagGGCGGGGAccuugggguccuAGGCGg -3'
miRNA:   3'- -CGUAc----CUGGUUU-----UCGCCUCU------------UCCGCg -5'
6197 5' -51.9 NC_001844.1 + 120047 0.68 0.961523
Target:  5'- gGCGUuuuguucGGCCAaaacGAGGCGGGGGucgcgauuGGCGCu -3'
miRNA:   3'- -CGUAc------CUGGU----UUUCGCCUCUu-------CCGCG- -5'
6197 5' -51.9 NC_001844.1 + 144224 0.67 0.965005
Target:  5'- ---aGGACCGcgcGGCuGAGguGGCGCu -3'
miRNA:   3'- cguaCCUGGUuu-UCGcCUCuuCCGCG- -5'
6197 5' -51.9 NC_001844.1 + 1149 0.67 0.968259
Target:  5'- -gGUGGGCaCAcAGAGaUGGAuaccgaGGAGGCGCg -3'
miRNA:   3'- cgUACCUG-GU-UUUC-GCCU------CUUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.