miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6198 3' -52.8 NC_001844.1 + 124878 0.66 0.973491
Target:  5'- aUGUCUgagUACAGGuccucauuaGCGGCuGCcCCCCCAc -3'
miRNA:   3'- cGCAGA---AUGUCU---------UGUCG-UGuGGGGGU- -5'
6198 3' -52.8 NC_001844.1 + 127119 0.73 0.706126
Target:  5'- cGCaGUCUUGgAGGccauGCAaCACACCCCCGg -3'
miRNA:   3'- -CG-CAGAAUgUCU----UGUcGUGUGGGGGU- -5'
6198 3' -52.8 NC_001844.1 + 120919 0.71 0.794859
Target:  5'- cCGcCUUugGGGACAGgGCGCCCgCGg -3'
miRNA:   3'- cGCaGAAugUCUUGUCgUGUGGGgGU- -5'
6198 3' -52.8 NC_001844.1 + 86028 0.71 0.813122
Target:  5'- aCGUUUUgGCAGAuacuccCGGCGCACCCCgAg -3'
miRNA:   3'- cGCAGAA-UGUCUu-----GUCGUGUGGGGgU- -5'
6198 3' -52.8 NC_001844.1 + 68403 0.69 0.878576
Target:  5'- cGCGUgcUGCAGAaagugcagauGCGGCaACGCCCCa- -3'
miRNA:   3'- -CGCAgaAUGUCU----------UGUCG-UGUGGGGgu -5'
6198 3' -52.8 NC_001844.1 + 49662 0.69 0.885781
Target:  5'- aGCGc----CAGGuCGGCAUACCCCCAc -3'
miRNA:   3'- -CGCagaauGUCUuGUCGUGUGGGGGU- -5'
6198 3' -52.8 NC_001844.1 + 141518 0.69 0.885781
Target:  5'- aGCGUCUUGgcCAGAuuGGCGucccuaACCCCCu -3'
miRNA:   3'- -CGCAGAAU--GUCUugUCGUg-----UGGGGGu -5'
6198 3' -52.8 NC_001844.1 + 21333 0.68 0.923903
Target:  5'- -aGUCaacaUGCGGAGUAGCAgGCCCCUg -3'
miRNA:   3'- cgCAGa---AUGUCUUGUCGUgUGGGGGu -5'
6198 3' -52.8 NC_001844.1 + 42753 0.68 0.927765
Target:  5'- cGCGcUCUggGCAGAgccgGCAagcgugaacguuguGCugGCCCCCGu -3'
miRNA:   3'- -CGC-AGAa-UGUCU----UGU--------------CGugUGGGGGU- -5'
6198 3' -52.8 NC_001844.1 + 25123 0.68 0.934608
Target:  5'- aGCGUCggggGC-GAGCaAGUcuACAUCCCCAu -3'
miRNA:   3'- -CGCAGaa--UGuCUUG-UCG--UGUGGGGGU- -5'
6198 3' -52.8 NC_001844.1 + 142443 0.68 0.934608
Target:  5'- cCGUCUUGCgccguggcccgAGGGCcGCGCACaCCCUg -3'
miRNA:   3'- cGCAGAAUG-----------UCUUGuCGUGUG-GGGGu -5'
6198 3' -52.8 NC_001844.1 + 144656 0.67 0.939583
Target:  5'- gGCGUCggGCuccAGCAGCGCgACCCUg- -3'
miRNA:   3'- -CGCAGaaUGuc-UUGUCGUG-UGGGGgu -5'
6198 3' -52.8 NC_001844.1 + 1205 0.67 0.948783
Target:  5'- gGCuGUgUUGUGGAGguGCACACCCCa- -3'
miRNA:   3'- -CG-CAgAAUGUCUUguCGUGUGGGGgu -5'
6198 3' -52.8 NC_001844.1 + 13765 0.67 0.953013
Target:  5'- uCGUCcucCAGAGCGG-GCACCUCCGg -3'
miRNA:   3'- cGCAGaauGUCUUGUCgUGUGGGGGU- -5'
6198 3' -52.8 NC_001844.1 + 120374 0.66 0.967563
Target:  5'- aCGUCUgggcgccacgGCGGAgcGCAGaACGCUCCCGg -3'
miRNA:   3'- cGCAGAa---------UGUCU--UGUCgUGUGGGGGU- -5'
6198 3' -52.8 NC_001844.1 + 2627 1.11 0.004127
Target:  5'- uGCGUCUUACAGAACAGCACACCCCCAu -3'
miRNA:   3'- -CGCAGAAUGUCUUGUCGUGUGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.