Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 6199 | 3' | -58.4 | NC_001844.1 | + | 86469 | 0.66 | 0.729098 |
|
Target: 5'- --uGGCAGUGugUGUuaguuuagauuGGGgUGGGGCa -3' miRNA: 3'- augUCGUCGCugACG-----------UUCgACCCCGa -5' |
|||||||
| 6199 | 3' | -58.4 | NC_001844.1 | + | 31231 | 0.67 | 0.698792 |
|
Target: 5'- gUAC-GCAGCGuACaUGCGAcUUGGGGCg -3' miRNA: 3'- -AUGuCGUCGC-UG-ACGUUcGACCCCGa -5' |
|||||||
| 6199 | 3' | -58.4 | NC_001844.1 | + | 24339 | 0.68 | 0.626488 |
|
Target: 5'- -uCAGCAGCcg-UGCAAGgUGGGGUUu -3' miRNA: 3'- auGUCGUCGcugACGUUCgACCCCGA- -5' |
|||||||
| 6199 | 3' | -58.4 | NC_001844.1 | + | 122060 | 0.68 | 0.605741 |
|
Target: 5'- cGCGGCGGCGGCgGCGuGUcGGGGa- -3' miRNA: 3'- aUGUCGUCGCUGaCGUuCGaCCCCga -5' |
|||||||
| 6199 | 3' | -58.4 | NC_001844.1 | + | 82514 | 0.69 | 0.585075 |
|
Target: 5'- --aAGCGGCGAgccccaucUUGC-GGCUGGGGUa -3' miRNA: 3'- augUCGUCGCU--------GACGuUCGACCCCGa -5' |
|||||||
| 6199 | 3' | -58.4 | NC_001844.1 | + | 79963 | 0.69 | 0.585075 |
|
Target: 5'- aUugAGCgGGUGGC-GCGGgucGCUGGGGCUg -3' miRNA: 3'- -AugUCG-UCGCUGaCGUU---CGACCCCGA- -5' |
|||||||
| 6199 | 3' | -58.4 | NC_001844.1 | + | 141764 | 0.69 | 0.573765 |
|
Target: 5'- --gAGCAGCGGCUcgcgcugGCAGGUuccgagcccUGGGGCc -3' miRNA: 3'- augUCGUCGCUGA-------CGUUCG---------ACCCCGa -5' |
|||||||
| 6199 | 3' | -58.4 | NC_001844.1 | + | 10163 | 0.69 | 0.564548 |
|
Target: 5'- cUGCAGCcagGGCgGACUGUAGGCggagcaUGGuGGCUg -3' miRNA: 3'- -AUGUCG---UCG-CUGACGUUCG------ACC-CCGA- -5' |
|||||||
| 6199 | 3' | -58.4 | NC_001844.1 | + | 3922 | 1.06 | 0.001816 |
|
Target: 5'- cUACAGCAGCGACUGCAAGCUGGGGCUa -3' miRNA: 3'- -AUGUCGUCGCUGACGUUCGACCCCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home