miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
620 5' -55.3 AC_000017.1 + 11498 0.66 0.598321
Target:  5'- ---gUGGcGGCcgCCGACCUGgUAAcCGCg -3'
miRNA:   3'- uauaGCC-CCG--GGCUGGACgAUUuGCG- -5'
620 5' -55.3 AC_000017.1 + 10543 0.66 0.564374
Target:  5'- -gGUCGGGacGCuCUGGCCgGUcAGGCGCg -3'
miRNA:   3'- uaUAGCCC--CG-GGCUGGaCGaUUUGCG- -5'
620 5' -55.3 AC_000017.1 + 18448 0.66 0.553164
Target:  5'- cUGUCGGGGCgCGGgC-GCUuuuCGCc -3'
miRNA:   3'- uAUAGCCCCGgGCUgGaCGAuuuGCG- -5'
620 5' -55.3 AC_000017.1 + 10240 0.66 0.553164
Target:  5'- -gGUCuGGuGGCCCGGCUgcgagaGCUcgguguaucugAGACGCg -3'
miRNA:   3'- uaUAG-CC-CCGGGCUGGa-----CGA-----------UUUGCG- -5'
620 5' -55.3 AC_000017.1 + 26467 0.67 0.519971
Target:  5'- ---cUGGGGCgCCGGCgaGggGAAUGCg -3'
miRNA:   3'- uauaGCCCCG-GGCUGgaCgaUUUGCG- -5'
620 5' -55.3 AC_000017.1 + 11241 0.67 0.509078
Target:  5'- ---gCGaGGGCCUGGCgCgGCUagGAGCGCc -3'
miRNA:   3'- uauaGC-CCCGGGCUG-GaCGA--UUUGCG- -5'
620 5' -55.3 AC_000017.1 + 12134 0.67 0.505829
Target:  5'- ---aCGcGGGCgCUGACCUGCgcugggccccaagccGACGCg -3'
miRNA:   3'- uauaGC-CCCG-GGCUGGACGau-------------UUGCG- -5'
620 5' -55.3 AC_000017.1 + 27995 0.68 0.466538
Target:  5'- cAUAUCGaGGGCCCGGC--GCacGGCGUc -3'
miRNA:   3'- -UAUAGC-CCCGGGCUGgaCGauUUGCG- -5'
620 5' -55.3 AC_000017.1 + 16253 0.68 0.445967
Target:  5'- -gGUCGGcGGCgguggCGACgUGCUAcGCGCc -3'
miRNA:   3'- uaUAGCC-CCGg----GCUGgACGAUuUGCG- -5'
620 5' -55.3 AC_000017.1 + 12185 0.71 0.279169
Target:  5'- ---cUGGGGCCgGACCUggGCUGGcgguggcacccGCGCg -3'
miRNA:   3'- uauaGCCCCGGgCUGGA--CGAUU-----------UGCG- -5'
620 5' -55.3 AC_000017.1 + 22669 0.73 0.231564
Target:  5'- -aGUUGGGGCcuCCGcCCUGCgc-GCGCg -3'
miRNA:   3'- uaUAGCCCCG--GGCuGGACGauuUGCG- -5'
620 5' -55.3 AC_000017.1 + 9854 0.87 0.023102
Target:  5'- cAUGUCcuuGGGUCCGGCCUGCUGAAUGCg -3'
miRNA:   3'- -UAUAGc--CCCGGGCUGGACGAUUUGCG- -5'
620 5' -55.3 AC_000017.1 + 22693 1.11 0.0004
Target:  5'- gAUAUCGGGGCCCGACCUGCUAAACGCg -3'
miRNA:   3'- -UAUAGCCCCGGGCUGGACGAUUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.