miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6200 5' -52 NC_001844.1 + 120903 0.66 0.982051
Target:  5'- gGCgccCGCGGc-GCUUUUGAGCAGCg -3'
miRNA:   3'- gCGau-GUGUCauCGGAGAUUCGUCGg -5'
6200 5' -52 NC_001844.1 + 140390 0.66 0.977499
Target:  5'- uGCccGCAgAGUGauGCCUC-AAGCGGCa -3'
miRNA:   3'- gCGa-UGUgUCAU--CGGAGaUUCGUCGg -5'
6200 5' -52 NC_001844.1 + 116489 0.67 0.954886
Target:  5'- uGCguugGC-CGG-GGCCUCUAAGCGcaagcgcuGCCa -3'
miRNA:   3'- gCGa---UGuGUCaUCGGAGAUUCGU--------CGG- -5'
6200 5' -52 NC_001844.1 + 13912 0.68 0.946301
Target:  5'- gGCUccGCGCAGUuGCCgCUuAGCGcuGCCg -3'
miRNA:   3'- gCGA--UGUGUCAuCGGaGAuUCGU--CGG- -5'
6200 5' -52 NC_001844.1 + 122001 0.68 0.946301
Target:  5'- gCGCcACcCAGUAGCgCUCcGAGuCGGCUg -3'
miRNA:   3'- -GCGaUGuGUCAUCG-GAGaUUC-GUCGG- -5'
6200 5' -52 NC_001844.1 + 68444 0.68 0.936704
Target:  5'- gGCUAa--AGUGGCCgacgCccuGGCAGCCc -3'
miRNA:   3'- gCGAUgugUCAUCGGa---Gau-UCGUCGG- -5'
6200 5' -52 NC_001844.1 + 65099 0.68 0.936197
Target:  5'- aGCUACccaucaaGCGGUGGagcaCUCUAAGgcuguaCAGCCu -3'
miRNA:   3'- gCGAUG-------UGUCAUCg---GAGAUUC------GUCGG- -5'
6200 5' -52 NC_001844.1 + 69704 0.69 0.91381
Target:  5'- cCGCUgGCGCuucGUggAGCUUCUcccguggguacgcAAGCAGCCa -3'
miRNA:   3'- -GCGA-UGUGu--CA--UCGGAGA-------------UUCGUCGG- -5'
6200 5' -52 NC_001844.1 + 59846 0.69 0.901735
Target:  5'- uGCUuuCAgGGcAGCUUCUGcGGCAGCCc -3'
miRNA:   3'- gCGAu-GUgUCaUCGGAGAU-UCGUCGG- -5'
6200 5' -52 NC_001844.1 + 115756 0.69 0.901735
Target:  5'- aGCUacccggcccaaGCACAGgcuGCCUCUcaaCAGCCg -3'
miRNA:   3'- gCGA-----------UGUGUCau-CGGAGAuucGUCGG- -5'
6200 5' -52 NC_001844.1 + 74497 0.7 0.888044
Target:  5'- gGCgGCACAGUcAGCCUgUcgcaugcugggAAGCGGCUu -3'
miRNA:   3'- gCGaUGUGUCA-UCGGAgA-----------UUCGUCGG- -5'
6200 5' -52 NC_001844.1 + 136097 0.72 0.787187
Target:  5'- gCGCUACugGGUGGCgCUgCUGgacauggcGGgGGCCg -3'
miRNA:   3'- -GCGAUGugUCAUCG-GA-GAU--------UCgUCGG- -5'
6200 5' -52 NC_001844.1 + 64421 0.72 0.767843
Target:  5'- cCGC--CGCGGUAGCCgau--GCAGCCa -3'
miRNA:   3'- -GCGauGUGUCAUCGGagauuCGUCGG- -5'
6200 5' -52 NC_001844.1 + 115912 0.73 0.737873
Target:  5'- cCGC-ACGCGGcAGCCUC--GGUGGCCa -3'
miRNA:   3'- -GCGaUGUGUCaUCGGAGauUCGUCGG- -5'
6200 5' -52 NC_001844.1 + 144513 0.73 0.727671
Target:  5'- gGCcGCGCGGUGG-CUCUGGGCugcGCCc -3'
miRNA:   3'- gCGaUGUGUCAUCgGAGAUUCGu--CGG- -5'
6200 5' -52 NC_001844.1 + 13865 1.04 0.012984
Target:  5'- gCGC-ACACAGUAGCCUCUAAGCAGCCg -3'
miRNA:   3'- -GCGaUGUGUCAUCGGAGAUUCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.