miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6204 3' -54.7 NC_001844.1 + 60132 0.67 0.910983
Target:  5'- ---uGCGGCCgaaUAGCG-CCAGCUCc- -3'
miRNA:   3'- gaggUGCCGGa--AUUGCaGGUCGAGac -5'
6204 3' -54.7 NC_001844.1 + 50543 0.67 0.904778
Target:  5'- uUUCACGGCCUgAugGUUUAGCg--- -3'
miRNA:   3'- gAGGUGCCGGAaUugCAGGUCGagac -5'
6204 3' -54.7 NC_001844.1 + 122586 0.67 0.898333
Target:  5'- -cUCACGGUCgccGGCGUCguGCUCg- -3'
miRNA:   3'- gaGGUGCCGGaa-UUGCAGguCGAGac -5'
6204 3' -54.7 NC_001844.1 + 117740 0.67 0.891649
Target:  5'- -aCUACGGCgCU--AC-UCCGGCUCUGc -3'
miRNA:   3'- gaGGUGCCG-GAauUGcAGGUCGAGAC- -5'
6204 3' -54.7 NC_001844.1 + 115530 0.69 0.812781
Target:  5'- cCUCCGCGGCgg-AGCGUCC-GCUg-- -3'
miRNA:   3'- -GAGGUGCCGgaaUUGCAGGuCGAgac -5'
6204 3' -54.7 NC_001844.1 + 39692 0.7 0.785477
Target:  5'- -gCCACGcucaauGCCUUGGCGUcuaacccagCCAGCUCUc -3'
miRNA:   3'- gaGGUGC------CGGAAUUGCA---------GGUCGAGAc -5'
6204 3' -54.7 NC_001844.1 + 40883 1.1 0.003074
Target:  5'- aCUCCACGGCCUUAACGUCCAGCUCUGg -3'
miRNA:   3'- -GAGGUGCCGGAAUUGCAGGUCGAGAC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.