miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6204 5' -55.8 NC_001844.1 + 13537 0.66 0.881089
Target:  5'- -uCUGgaaaGCCCAGCucGGCuuguAGCCGCUg -3'
miRNA:   3'- guGACa---CGGGUUG--UCGuu--UCGGCGGa -5'
6204 5' -55.8 NC_001844.1 + 32586 0.66 0.873775
Target:  5'- cCGC-GUGCCCcg-AGCAGAGCaCGUCa -3'
miRNA:   3'- -GUGaCACGGGuugUCGUUUCG-GCGGa -5'
6204 5' -55.8 NC_001844.1 + 104752 0.67 0.82014
Target:  5'- gACUcUGaCCCAACGGCGAucagucuguauccccAGCCGCa- -3'
miRNA:   3'- gUGAcAC-GGGUUGUCGUU---------------UCGGCGga -5'
6204 5' -55.8 NC_001844.1 + 113771 0.68 0.798591
Target:  5'- aGCUGUGUCgGGCGGCcAAcGUgGCCUa -3'
miRNA:   3'- gUGACACGGgUUGUCGuUU-CGgCGGA- -5'
6204 5' -55.8 NC_001844.1 + 143727 0.69 0.741046
Target:  5'- -----aGCCCGGCGGCGGAGCgGUCc -3'
miRNA:   3'- gugacaCGGGUUGUCGUUUCGgCGGa -5'
6204 5' -55.8 NC_001844.1 + 115457 0.69 0.740051
Target:  5'- gCGCUGUGCuCCAACcccgcugGGCucgagacuGCUGCCUg -3'
miRNA:   3'- -GUGACACG-GGUUG-------UCGuuu-----CGGCGGA- -5'
6204 5' -55.8 NC_001844.1 + 107596 0.7 0.690273
Target:  5'- gACUGccaauaCCCAcCAGCAAAGCCaGCCa -3'
miRNA:   3'- gUGACac----GGGUuGUCGUUUCGG-CGGa -5'
6204 5' -55.8 NC_001844.1 + 142977 0.7 0.690273
Target:  5'- uGCUGcUGCCCAAC-GUc--GCCGCCg -3'
miRNA:   3'- gUGAC-ACGGGUUGuCGuuuCGGCGGa -5'
6204 5' -55.8 NC_001844.1 + 73656 0.71 0.596447
Target:  5'- -----cGCCCAGCAGCccucGCCGCCg -3'
miRNA:   3'- gugacaCGGGUUGUCGuuu-CGGCGGa -5'
6204 5' -55.8 NC_001844.1 + 73745 0.71 0.596447
Target:  5'- -----cGCCCAGCAGCccucGCCGCCg -3'
miRNA:   3'- gugacaCGGGUUGUCGuuu-CGGCGGa -5'
6204 5' -55.8 NC_001844.1 + 40847 1.08 0.002667
Target:  5'- cCACUGUGCCCAACAGCAAAGCCGCCUg -3'
miRNA:   3'- -GUGACACGGGUUGUCGUUUCGGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.