miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6206 3' -54 NC_001844.1 + 42810 0.98 0.022439
Target:  5'- cGGGCG-CCCCAAAAUAAGCGCACACGu -3'
miRNA:   3'- -CCCGCgGGGGUUUUAUUCGCGUGUGC- -5'
6206 3' -54 NC_001844.1 + 136412 0.77 0.452618
Target:  5'- gGGGCcucCCCCCGAAAUcuGGcCGCGCGCGu -3'
miRNA:   3'- -CCCGc--GGGGGUUUUAu-UC-GCGUGUGC- -5'
6206 3' -54 NC_001844.1 + 120926 0.75 0.520239
Target:  5'- cGGGCGCCCgCCuuuGGGgacaGGGCGCcCGCGg -3'
miRNA:   3'- -CCCGCGGG-GGu--UUUa---UUCGCGuGUGC- -5'
6206 3' -54 NC_001844.1 + 144206 0.74 0.601818
Target:  5'- uGGCGCUCCCGGGGccagcgaacGGCGCAgGCGa -3'
miRNA:   3'- cCCGCGGGGGUUUUau-------UCGCGUgUGC- -5'
6206 3' -54 NC_001844.1 + 137165 0.73 0.632982
Target:  5'- cGGGCGCCCggCCAA---AAGCGCuCGCc -3'
miRNA:   3'- -CCCGCGGG--GGUUuuaUUCGCGuGUGc -5'
6206 3' -54 NC_001844.1 + 6142 0.73 0.663103
Target:  5'- uGGCGCuuaucggCCUCGAGGUGGGUGCGCAUc -3'
miRNA:   3'- cCCGCG-------GGGGUUUUAUUCGCGUGUGc -5'
6206 3' -54 NC_001844.1 + 52015 0.72 0.715408
Target:  5'- uGGGCGCCCCCuucc-GAGCGgcuUugACa -3'
miRNA:   3'- -CCCGCGGGGGuuuuaUUCGC---GugUGc -5'
6206 3' -54 NC_001844.1 + 114801 0.72 0.715408
Target:  5'- cGGGCGCCCCaggggCAAGAgcgggAAGCgGCGCucCGa -3'
miRNA:   3'- -CCCGCGGGG-----GUUUUa----UUCG-CGUGu-GC- -5'
6206 3' -54 NC_001844.1 + 72358 0.71 0.76484
Target:  5'- cGGC-UUUCUAGAAUAAGCGUACACGc -3'
miRNA:   3'- cCCGcGGGGGUUUUAUUCGCGUGUGC- -5'
6206 3' -54 NC_001844.1 + 40226 0.7 0.793116
Target:  5'- uGGGCGCCCCCcauuGGUAcuGGCaaACAUa -3'
miRNA:   3'- -CCCGCGGGGGuu--UUAU--UCGcgUGUGc -5'
6206 3' -54 NC_001844.1 + 78248 0.7 0.802254
Target:  5'- aGGGUuaggauGCCCUgu-AAUAAGCGCugGCGc -3'
miRNA:   3'- -CCCG------CGGGGguuUUAUUCGCGugUGC- -5'
6206 3' -54 NC_001844.1 + 33815 0.7 0.802254
Target:  5'- -aGCGCUCCCGAAcucaacAGCGCAC-CGg -3'
miRNA:   3'- ccCGCGGGGGUUUuau---UCGCGUGuGC- -5'
6206 3' -54 NC_001844.1 + 49652 0.7 0.820045
Target:  5'- cGGCauaCCCCCAcuuAAUAGGUGCAC-CGu -3'
miRNA:   3'- cCCGc--GGGGGUu--UUAUUCGCGUGuGC- -5'
6206 3' -54 NC_001844.1 + 114424 0.69 0.845388
Target:  5'- cGGGCcUCCggCCAGGGaGGGCGCGCGCu -3'
miRNA:   3'- -CCCGcGGG--GGUUUUaUUCGCGUGUGc -5'
6206 3' -54 NC_001844.1 + 142140 0.69 0.853446
Target:  5'- uGGCGUCCCCGAuGUGGG-GCAgGgGg -3'
miRNA:   3'- cCCGCGGGGGUUuUAUUCgCGUgUgC- -5'
6206 3' -54 NC_001844.1 + 141386 0.69 0.861297
Target:  5'- uGGUGCCCCUucucUGAGCGUcCGCu -3'
miRNA:   3'- cCCGCGGGGGuuuuAUUCGCGuGUGc -5'
6206 3' -54 NC_001844.1 + 142437 0.69 0.861297
Target:  5'- -uGCGCCguggCCCGAGGgccGCGCACACc -3'
miRNA:   3'- ccCGCGG----GGGUUUUauuCGCGUGUGc -5'
6206 3' -54 NC_001844.1 + 120159 0.69 0.864378
Target:  5'- cGGCGCCCCCcgcuGUGAcaugcggcaggauccGuCGCACGCc -3'
miRNA:   3'- cCCGCGGGGGuuu-UAUU---------------C-GCGUGUGc -5'
6206 3' -54 NC_001844.1 + 67167 0.69 0.868935
Target:  5'- -aGCGCCUauaaaCGAAGUGcuAGcCGCACACGa -3'
miRNA:   3'- ccCGCGGGg----GUUUUAU--UC-GCGUGUGC- -5'
6206 3' -54 NC_001844.1 + 101325 0.69 0.868935
Target:  5'- cGGGCGCaaccguacaCCCAAAGUuguGGCGUAaGCu -3'
miRNA:   3'- -CCCGCGg--------GGGUUUUAu--UCGCGUgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.