miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6208 5' -56.2 NC_001844.1 + 41157 0.66 0.892803
Target:  5'- --aCCCCCAUugACGCUUgAAGGgugCGc -3'
miRNA:   3'- guaGGGGGUGugUGCGGGgUUUCa--GU- -5'
6208 5' -56.2 NC_001844.1 + 79474 0.67 0.84861
Target:  5'- aGUCUucugagagCCUGCACAUGCUCCAggAGGUCGc -3'
miRNA:   3'- gUAGG--------GGGUGUGUGCGGGGU--UUCAGU- -5'
6208 5' -56.2 NC_001844.1 + 143462 0.67 0.840513
Target:  5'- --gCCCCUcgggcgGCAUggGCCCCAAAGcUCGa -3'
miRNA:   3'- guaGGGGG------UGUGugCGGGGUUUC-AGU- -5'
6208 5' -56.2 NC_001844.1 + 143344 0.67 0.815102
Target:  5'- -cUCCCCCGC-CGCcgGCUCCAGGGg-- -3'
miRNA:   3'- guAGGGGGUGuGUG--CGGGGUUUCagu -5'
6208 5' -56.2 NC_001844.1 + 104054 0.68 0.806285
Target:  5'- --gCCCCCGCGCAUGCUCCc------ -3'
miRNA:   3'- guaGGGGGUGUGUGCGGGGuuucagu -5'
6208 5' -56.2 NC_001844.1 + 142906 0.68 0.797307
Target:  5'- -uUCCCCCA-ACAUGCCCCc-GGcCAg -3'
miRNA:   3'- guAGGGGGUgUGUGCGGGGuuUCaGU- -5'
6208 5' -56.2 NC_001844.1 + 56381 0.68 0.778909
Target:  5'- aGUCUaCUCGCGUACGCCCCAAGGg-- -3'
miRNA:   3'- gUAGG-GGGUGUGUGCGGGGUUUCagu -5'
6208 5' -56.2 NC_001844.1 + 56177 0.68 0.778909
Target:  5'- cCGUCCCCCugGCGCugaguGCgCCCAGAa--- -3'
miRNA:   3'- -GUAGGGGGugUGUG-----CG-GGGUUUcagu -5'
6208 5' -56.2 NC_001844.1 + 96683 0.68 0.768559
Target:  5'- -uUCCCCCAugggguuuagucuCACAgGgCgCCAAAGUCAa -3'
miRNA:   3'- guAGGGGGU-------------GUGUgCgG-GGUUUCAGU- -5'
6208 5' -56.2 NC_001844.1 + 113992 0.69 0.759979
Target:  5'- gGUCUCCCuagaGgACugGCCCCAGgacGGUCc -3'
miRNA:   3'- gUAGGGGG----UgUGugCGGGGUU---UCAGu -5'
6208 5' -56.2 NC_001844.1 + 113034 0.71 0.639387
Target:  5'- cCAUCCCCaa-ACGCGCCCCcu-GUUg -3'
miRNA:   3'- -GUAGGGGgugUGUGCGGGGuuuCAGu -5'
6208 5' -56.2 NC_001844.1 + 114813 0.71 0.608515
Target:  5'- cCGUCCCgUcaACGgGCGCCCCAGGGgCAa -3'
miRNA:   3'- -GUAGGGgG--UGUgUGCGGGGUUUCaGU- -5'
6208 5' -56.2 NC_001844.1 + 58746 1.08 0.002776
Target:  5'- gCAUCCCCCACACACGCCCCAAAGUCAa -3'
miRNA:   3'- -GUAGGGGGUGUGUGCGGGGUUUCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.