miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6209 5' -59.4 NC_001844.1 + 39711 0.66 0.732754
Target:  5'- aUGUGcGCGG-GCUACCugggccacgcucaauGCCuuGGCGUCUAa -3'
miRNA:   3'- -ACGC-CGCCgCGAUGG---------------UGG--UCGUAGAU- -5'
6209 5' -59.4 NC_001844.1 + 101190 0.66 0.728827
Target:  5'- cUGUGGUugaacuGGCGaggugUACCGCCAGCGUg-- -3'
miRNA:   3'- -ACGCCG------CCGCg----AUGGUGGUCGUAgau -5'
6209 5' -59.4 NC_001844.1 + 50994 0.66 0.698991
Target:  5'- gGCGGUcuccccuugGGCaGCaGCCGCCAGCAc--- -3'
miRNA:   3'- aCGCCG---------CCG-CGaUGGUGGUCGUagau -5'
6209 5' -59.4 NC_001844.1 + 144217 0.66 0.698991
Target:  5'- cGCGGCugagguGGCGCUcCCgggGCCAGCGa--- -3'
miRNA:   3'- aCGCCG------CCGCGAuGG---UGGUCGUagau -5'
6209 5' -59.4 NC_001844.1 + 102762 0.66 0.688922
Target:  5'- cUGCGGCGacuuauaggcaGCGUUuaacauCCACCAGCAg--- -3'
miRNA:   3'- -ACGCCGC-----------CGCGAu-----GGUGGUCGUagau -5'
6209 5' -59.4 NC_001844.1 + 117638 0.67 0.638043
Target:  5'- gUGgGGCGGaGCUACCACCccAGCu---- -3'
miRNA:   3'- -ACgCCGCCgCGAUGGUGG--UCGuagau -5'
6209 5' -59.4 NC_001844.1 + 136546 0.67 0.638043
Target:  5'- gGCGGUgaGGgGCUGuaccCCACCAGCAc--- -3'
miRNA:   3'- aCGCCG--CCgCGAU----GGUGGUCGUagau -5'
6209 5' -59.4 NC_001844.1 + 143722 0.67 0.62782
Target:  5'- gGCGGCGGaGCgguCCGCUGGCAg--- -3'
miRNA:   3'- aCGCCGCCgCGau-GGUGGUCGUagau -5'
6209 5' -59.4 NC_001844.1 + 134537 0.68 0.617601
Target:  5'- -aCGGCGGUGCUA--ACCGGCucuUCUGc -3'
miRNA:   3'- acGCCGCCGCGAUggUGGUCGu--AGAU- -5'
6209 5' -59.4 NC_001844.1 + 137936 0.69 0.546772
Target:  5'- aGCgGGgGGCGCcguCCACCAGCcccAUCa- -3'
miRNA:   3'- aCG-CCgCCGCGau-GGUGGUCG---UAGau -5'
6209 5' -59.4 NC_001844.1 + 140840 0.69 0.536834
Target:  5'- gGCGGCGGgaUGaCUACCGCCGGgGUg-- -3'
miRNA:   3'- aCGCCGCC--GC-GAUGGUGGUCgUAgau -5'
6209 5' -59.4 NC_001844.1 + 38939 0.69 0.507424
Target:  5'- -cUGGCGGCGCUAauuUCugCAGCAcgCUGu -3'
miRNA:   3'- acGCCGCCGCGAU---GGugGUCGUa-GAU- -5'
6209 5' -59.4 NC_001844.1 + 82453 0.7 0.469329
Target:  5'- cGCGuGUGGCGCUACCAaucugaaugaUGGCGUUUAc -3'
miRNA:   3'- aCGC-CGCCGCGAUGGUg---------GUCGUAGAU- -5'
6209 5' -59.4 NC_001844.1 + 122603 0.7 0.450836
Target:  5'- gGCGGCGaCGCgugGCCcucacggucGCCGGCGUCg- -3'
miRNA:   3'- aCGCCGCcGCGa--UGG---------UGGUCGUAGau -5'
6209 5' -59.4 NC_001844.1 + 142206 0.71 0.395346
Target:  5'- aGCGGCGGCucauggccaccgagGCUGCCGCguGCGg--- -3'
miRNA:   3'- aCGCCGCCG--------------CGAUGGUGguCGUagau -5'
6209 5' -59.4 NC_001844.1 + 41513 0.72 0.356929
Target:  5'- gGUGGgGGCgGCUACCGgCAGCggCUAu -3'
miRNA:   3'- aCGCCgCCG-CGAUGGUgGUCGuaGAU- -5'
6209 5' -59.4 NC_001844.1 + 66734 1.07 0.001523
Target:  5'- uUGCGGCGGCGCUACCACCAGCAUCUAg -3'
miRNA:   3'- -ACGCCGCCGCGAUGGUGGUCGUAGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.