miRNA display CGI


Results 41 - 47 of 47 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6210 3' -53.5 NC_001844.1 + 34494 0.7 0.838019
Target:  5'- uAAUUGGCGCuAAAACuUGCGCUGGUGUu -3'
miRNA:   3'- cUUGGCUGCG-UUUUG-ACGCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 113570 0.71 0.755498
Target:  5'- cAACCGAUggggccuugggGCAugGCUGCGCCcGGUGUa -3'
miRNA:   3'- cUUGGCUG-----------CGUuuUGACGCGG-UCGCG- -5'
6210 3' -53.5 NC_001844.1 + 21171 0.71 0.755498
Target:  5'- -cGCCGuuacuUGCGGGGCcgcaGCGCUAGCGCu -3'
miRNA:   3'- cuUGGCu----GCGUUUUGa---CGCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 101193 0.71 0.74563
Target:  5'- aGGCUGugGUuGAACUGgcgagguguacCGCCAGCGUg -3'
miRNA:   3'- cUUGGCugCGuUUUGAC-----------GCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 60716 0.73 0.663758
Target:  5'- -cACCGccuCGCAAAACccGCGuCUAGCGCa -3'
miRNA:   3'- cuUGGCu--GCGUUUUGa-CGC-GGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 35728 0.76 0.498865
Target:  5'- cGAAUCGACGUuAAAUcuaUGUGUCAGCGCc -3'
miRNA:   3'- -CUUGGCUGCGuUUUG---ACGCGGUCGCG- -5'
6210 3' -53.5 NC_001844.1 + 67189 1.11 0.003253
Target:  5'- aGAACCGACGCAAAACUGCGCCAGCGCc -3'
miRNA:   3'- -CUUGGCUGCGUUUUGACGCGGUCGCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.