miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6211 3' -59.5 NC_001844.1 + 138154 0.66 0.781198
Target:  5'- gGUGGUCgUGGggGugGUCGUGgGgGUg -3'
miRNA:   3'- -CGUCGGgACCuuCugCGGCGCgCaCG- -5'
6211 3' -59.5 NC_001844.1 + 138190 0.66 0.781198
Target:  5'- gGUGGUCgUGGggGugGUCGUGgGgGUg -3'
miRNA:   3'- -CGUCGGgACCuuCugCGGCGCgCaCG- -5'
6211 3' -59.5 NC_001844.1 + 138226 0.66 0.781198
Target:  5'- gGUGGUCgUGGggGugGUCGUGgGgGUg -3'
miRNA:   3'- -CGUCGGgACCuuCugCGGCGCgCaCG- -5'
6211 3' -59.5 NC_001844.1 + 138262 0.66 0.781198
Target:  5'- gGUGGUCgUGGggGugGUCGUGgGgGUg -3'
miRNA:   3'- -CGUCGGgACCuuCugCGGCGCgCaCG- -5'
6211 3' -59.5 NC_001844.1 + 138298 0.66 0.781198
Target:  5'- gGUGGUCgUGGggGugGUCGUGgGgGUg -3'
miRNA:   3'- -CGUCGGgACCuuCugCGGCGCgCaCG- -5'
6211 3' -59.5 NC_001844.1 + 99664 0.66 0.772094
Target:  5'- uGCuaaCCCUGGAcggccaagaAGACGCCGagguuuCGUGUg -3'
miRNA:   3'- -CGuc-GGGACCU---------UCUGCGGCgc----GCACG- -5'
6211 3' -59.5 NC_001844.1 + 144542 0.66 0.772094
Target:  5'- cGCAGCCaUGccccAAGGCcccaucgguugGCCGCGCGgugGCu -3'
miRNA:   3'- -CGUCGGgACc---UUCUG-----------CGGCGCGCa--CG- -5'
6211 3' -59.5 NC_001844.1 + 141074 0.66 0.76287
Target:  5'- uCGGCCCcGGGAGACcCCGgGCaggucucgGUGUc -3'
miRNA:   3'- cGUCGGGaCCUUCUGcGGCgCG--------CACG- -5'
6211 3' -59.5 NC_001844.1 + 34345 0.66 0.753536
Target:  5'- aGUAGCUCauUGucuAG-UGCUGCGCGUGCu -3'
miRNA:   3'- -CGUCGGG--ACcu-UCuGCGGCGCGCACG- -5'
6211 3' -59.5 NC_001844.1 + 142586 0.66 0.744099
Target:  5'- -aAGCCCggGGAcagcGGACGCucCGCcGCGgagGCg -3'
miRNA:   3'- cgUCGGGa-CCU----UCUGCG--GCG-CGCa--CG- -5'
6211 3' -59.5 NC_001844.1 + 115667 0.66 0.744099
Target:  5'- cGCGGCCCUcGGccacggcgcAAGACggcgGCCGCGgGUc- -3'
miRNA:   3'- -CGUCGGGA-CC---------UUCUG----CGGCGCgCAcg -5'
6211 3' -59.5 NC_001844.1 + 120924 0.67 0.705503
Target:  5'- gGC-GCCCgccuuuggGGAcaGGGCGCC-CGCG-GCg -3'
miRNA:   3'- -CGuCGGGa-------CCU--UCUGCGGcGCGCaCG- -5'
6211 3' -59.5 NC_001844.1 + 113895 0.67 0.705503
Target:  5'- cGCuGGCCCcGGGAGcgccaccucaGCCGCGCG-GUc -3'
miRNA:   3'- -CG-UCGGGaCCUUCug--------CGGCGCGCaCG- -5'
6211 3' -59.5 NC_001844.1 + 122593 0.67 0.705503
Target:  5'- cGUGGCCCUcacGGuCGCCGgCGuCGUGCu -3'
miRNA:   3'- -CGUCGGGAccuUCuGCGGC-GC-GCACG- -5'
6211 3' -59.5 NC_001844.1 + 94007 0.67 0.675904
Target:  5'- -aGGCauuaaCUGGAAGAUGUgGCuuGUGCa -3'
miRNA:   3'- cgUCGg----GACCUUCUGCGgCGcgCACG- -5'
6211 3' -59.5 NC_001844.1 + 121696 0.68 0.66994
Target:  5'- cGCGGCCagauuucgGGggGAgGCCccgcuccucuccugaGCGCGUcaGCg -3'
miRNA:   3'- -CGUCGGga------CCuuCUgCGG---------------CGCGCA--CG- -5'
6211 3' -59.5 NC_001844.1 + 70431 0.68 0.625991
Target:  5'- cGC-GCuCUUGGAAGGCGUCcaucugugugGCGCGaUGCu -3'
miRNA:   3'- -CGuCG-GGACCUUCUGCGG----------CGCGC-ACG- -5'
6211 3' -59.5 NC_001844.1 + 65002 0.7 0.546696
Target:  5'- aGCAGCCaaacGGuAGACGCUaGCGCGUc- -3'
miRNA:   3'- -CGUCGGga--CCuUCUGCGG-CGCGCAcg -5'
6211 3' -59.5 NC_001844.1 + 15329 0.7 0.536972
Target:  5'- cGCgAGaCCUUGGugcuuGugGCUGCGCGgggGCa -3'
miRNA:   3'- -CG-UC-GGGACCuu---CugCGGCGCGCa--CG- -5'
6211 3' -59.5 NC_001844.1 + 142203 0.7 0.51771
Target:  5'- gGCGGCUCaUGGccaccGAgGCUGcCGCGUGCg -3'
miRNA:   3'- -CGUCGGG-ACCuu---CUgCGGC-GCGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.