miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6212 5' -56.5 NC_001844.1 + 106558 0.66 0.892814
Target:  5'- aGGCcacCGGCgcugACCAGCucgacauGCACCACc -3'
miRNA:   3'- gCCGcu-GCCG----UGGUCGuu-----UGUGGUGa -5'
6212 5' -56.5 NC_001844.1 + 114849 0.66 0.892814
Target:  5'- aGGgGGCGG-ACCGGCAcccuACGCCu-- -3'
miRNA:   3'- gCCgCUGCCgUGGUCGUu---UGUGGuga -5'
6212 5' -56.5 NC_001844.1 + 121821 0.66 0.879019
Target:  5'- cCGGCG-CGGCGCCuaggucuaccaGGUAccucccCACCGCg -3'
miRNA:   3'- -GCCGCuGCCGUGG-----------UCGUuu----GUGGUGa -5'
6212 5' -56.5 NC_001844.1 + 34294 0.66 0.879019
Target:  5'- gGGCG-CGGUGCCAuGCu-ACGCCGu- -3'
miRNA:   3'- gCCGCuGCCGUGGU-CGuuUGUGGUga -5'
6212 5' -56.5 NC_001844.1 + 140913 0.66 0.864342
Target:  5'- gGGCGAugcCGGCACUgcugcucuGGCcGGAgACCGCUu -3'
miRNA:   3'- gCCGCU---GCCGUGG--------UCG-UUUgUGGUGA- -5'
6212 5' -56.5 NC_001844.1 + 66732 0.67 0.84077
Target:  5'- gCGGCGGCGcuacCACCAGCAucuagguuAC-CCAUUa -3'
miRNA:   3'- -GCCGCUGCc---GUGGUCGUu-------UGuGGUGA- -5'
6212 5' -56.5 NC_001844.1 + 64671 0.67 0.84077
Target:  5'- gGGCGAaaUGGCAgUucuuGGCAAGCGCgACa -3'
miRNA:   3'- gCCGCU--GCCGUgG----UCGUUUGUGgUGa -5'
6212 5' -56.5 NC_001844.1 + 144596 0.67 0.832523
Target:  5'- uCGGCGggcuccACGGCcCCGGCuccGCGCCGu- -3'
miRNA:   3'- -GCCGC------UGCCGuGGUCGuu-UGUGGUga -5'
6212 5' -56.5 NC_001844.1 + 143724 0.67 0.816355
Target:  5'- cCGGCGGCGGagcgguccgcuggcaGCCAGCucuccaAAGCGCgCGCc -3'
miRNA:   3'- -GCCGCUGCCg--------------UGGUCG------UUUGUG-GUGa -5'
6212 5' -56.5 NC_001844.1 + 136545 0.68 0.797784
Target:  5'- gCGGUGAgGGgcuguacccCACCAGCAcgGACACgGCc -3'
miRNA:   3'- -GCCGCUgCC---------GUGGUCGU--UUGUGgUGa -5'
6212 5' -56.5 NC_001844.1 + 8206 0.68 0.77948
Target:  5'- uGcGCGACGaCACUGGCGucugccGCGCCGCUa -3'
miRNA:   3'- gC-CGCUGCcGUGGUCGUu-----UGUGGUGA- -5'
6212 5' -56.5 NC_001844.1 + 134758 0.68 0.770125
Target:  5'- gGGCGcACuGaGCACCAGUGAACACUg-- -3'
miRNA:   3'- gCCGC-UG-C-CGUGGUCGUUUGUGGuga -5'
6212 5' -56.5 NC_001844.1 + 45371 0.69 0.751053
Target:  5'- aCGuuGGCGGCAgCAGCAGAacgguCACUGCUg -3'
miRNA:   3'- -GCcgCUGCCGUgGUCGUUU-----GUGGUGA- -5'
6212 5' -56.5 NC_001844.1 + 41511 0.69 0.721682
Target:  5'- uGGgGGCGGCuACCGGCAGcgGCUAUUc -3'
miRNA:   3'- gCCgCUGCCG-UGGUCGUUugUGGUGA- -5'
6212 5' -56.5 NC_001844.1 + 12062 0.69 0.711725
Target:  5'- aGGCG-CGGUauGCCuGGCAAGCaacgGCCACg -3'
miRNA:   3'- gCCGCuGCCG--UGG-UCGUUUG----UGGUGa -5'
6212 5' -56.5 NC_001844.1 + 121267 0.69 0.7017
Target:  5'- aCGGCGAUaaaggGGCACCguugGGCGuACGCaCACg -3'
miRNA:   3'- -GCCGCUG-----CCGUGG----UCGUuUGUG-GUGa -5'
6212 5' -56.5 NC_001844.1 + 22397 0.71 0.589462
Target:  5'- uGGCGAaGGCACCAGUucuccagucACACCAa- -3'
miRNA:   3'- gCCGCUgCCGUGGUCGuu-------UGUGGUga -5'
6212 5' -56.5 NC_001844.1 + 144206 0.74 0.434481
Target:  5'- uGGCGcuccCGGgGCCAGCGAACGgCGCa -3'
miRNA:   3'- gCCGCu---GCCgUGGUCGUUUGUgGUGa -5'
6212 5' -56.5 NC_001844.1 + 78916 0.77 0.312894
Target:  5'- gGGCGcGCuGGCAUCAGCAGAUGCCAUc -3'
miRNA:   3'- gCCGC-UG-CCGUGGUCGUUUGUGGUGa -5'
6212 5' -56.5 NC_001844.1 + 68935 0.93 0.030093
Target:  5'- uCGGCGACGGC-CCaAGCAAACACCACUa -3'
miRNA:   3'- -GCCGCUGCCGuGG-UCGUUUGUGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.